Joe082411

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Wednesday, August 24, 2011

  • Viral miRNA
    • Found a bug in pathwaysmember.py
    • re-ran pathway contributions
  • RNA-Seq
    • downloaded TAIR9 cdna's
    • bowtie -S a_thaliana file.fastq file.sam on all SRR*.fastq files
      • i.e. bowtie -S a_thaliana SRR018347.fastq SRR018347.sam
  • ToDo
    • Viral miRNA
    • RNA-Seq
      • retrieve *.sam files to analyze