Cbcb - User contributions [en]

Getting Started in CBCB

2017-09-18T17:20:21Z

Suzantrt: /* Getting Building Access and Room Keys */

You may want to review the following:

[[Media:CBCB-quick-guide.pdf]]

==Getting Building Access and Room Keys==

CBCB is located on the 3rd floor of The Biomolecular Sciences Building identified on campus maps as Building #296. The building is secure and access is gained by either using your UM ID card, guest card or entering the 3-digit code of the person you to visit at the call box on the right side of the front door.

Contact the Center Coordinator, Barbara Lewis, about gaining card access to the building. She will need the following information:
*An notification email from your sponsor/adviser
*Your Name
*Your 9 Digit University ID number
*Your Contact email

Along with your assigned space and phone numbers, the coordinator will send your information to UMIACS Coordinator Edna Walker who will contact campus security to add you into their system. ''Note: clearance usually takes a number of days, so contact the coordinator as soon as possible.''

If you prefer not to send your information through email feel free to contact the coordinator in person.

You must get your key from the coordinator in person.

Barbara Lewis 
Room 3121 
Biomolecular Sciences Bldg #296 
301.405.0368 
blewis[at]umd.edu 

==Research In Progress Seminars==

These seminars are held through the year. For information go to [http://cbcb.umd.edu/node/18625 CBCB Research in Progress]

For a list of our Disk Storage and amount of available space left on each one, see [http://wiki.umiacs.umd.edu/cbcb-private/index.php/Storage wiki.umiacs.umd.edu/cbcb-private/index.php/Storage] 

== Configuring Your Home Directory and Shell ==

WARNING: <code>/fs/sz-user-supported/</code> and <code>/cbcb/software</code> has been deprecated as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. 

We import common settings files that set our path variables to include commonly shared software repositories.

As a start, add the following line to the top of the file called ".bashrc" located in your home directory (/nfshomes/username/):

. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

This will import the common bashrc.cbcb file into your own bashrc file every time you log in.

Now add this line to your ".bash_profile" file, also located in your home directory:

. ~/.bashrc

This will import your personal bashrc file every time you log in. Now you should have access to most of the locally installed software like "blastall" and "AMOS."

If you want to add any addition commands to your bashrc file, such as setting your default text editor to "vim" or formatting the output of bash commands (eg. "ls"), add the appropriate commands after the imported common files as shown in this example:

. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

alias vi='vim'

alias ls='ls --color'

If you decide you want to change the settings in the common bashrc.cbcb to better suit your personal needs, then please copy and paste its contents into your personal bashrc file. '''Do not modify the common bashrc.cbcb file as it will affect everyone's environment.''' Also check back periodically as people may add common paths for new software.

If you have any other problems, contact staff [at] umiacs.umd.edu or your PI. 

More resources can be found at [https://wiki.umiacs.umd.edu/umiacs/index.php/GettingStarted umiacs wiki]

== CBCB Software Modules ==
To use CBCB Software Modules, see [[CBCB Software Modules]]

== Printing ==
Go to the umiacs wiki to find [https://wiki.umiacs.umd.edu/umiacs/index.php/Printing system-specific guides for printing], and be sure to [https://wiki.umiacs.umd.edu/umiacs/index.php/PrinterQueueNaming add 'nb' to the end of your print queue] to avoid wasting paper printing banners.

== Using the Wiki ==
* [http://en.wikipedia.org/wiki/Wikipedia:Cheatsheet Wiki Formatting Cheatsheet]
* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]

== When You Travel ==

[[Media:CBCB_travel_request_form_oct_2014.pdf‎]] form to fill out to obtain information for travel reimbursement

[[Media:Travel_101_cbcb_revised_4-2013.pdf]] for more detailed travel info

Getting Started in CBCB

2017-09-18T17:14:22Z

Suzantrt: /* Getting Building Access and Room Keys */

You may want to review the following:

[[Media:CBCB-quick-guide.pdf]]

==Getting Building Access and Room Keys==

CBCB is located on the 3rd floor of The Biomolecular Sciences Building identified on campus maps as Building #296. The building is secure and access is gained by either using your UM ID card, guest card or entering the 3-digit code of the person you to visit at the call box on the right side of the front door.

Contact the Center Coordinator, Christine Bogan-Phillips, about gaining card access to the building. She will need the following information:
*An notification email from your sponsor/adviser
*Your Name
*Your 9 Digit University ID number
*Your Contact email

Along with your assigned space and phone numbers, the coordinator will send your information to UMIACS Coordinator Edna Walker who will contact campus security to add you into their system. ''Note: clearance usually takes a number of days, so contact the coordinator as soon as possible.''

If you prefer not to send your information through email feel free to contact the coordinator in person.

You must get your key from the coordinator in person.

Barbara Lewis 
Room 3121 
Biomolecular Sciences Bldg #296 
301.405.0368 
blewis[at]umd.edu 

==Research In Progress Seminars==

These seminars are held through the year. For information go to [http://cbcb.umd.edu/node/18625 CBCB Research in Progress]

For a list of our Disk Storage and amount of available space left on each one, see [http://wiki.umiacs.umd.edu/cbcb-private/index.php/Storage wiki.umiacs.umd.edu/cbcb-private/index.php/Storage] 

== Configuring Your Home Directory and Shell ==

WARNING: <code>/fs/sz-user-supported/</code> and <code>/cbcb/software</code> has been deprecated as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. 

We import common settings files that set our path variables to include commonly shared software repositories.

As a start, add the following line to the top of the file called ".bashrc" located in your home directory (/nfshomes/username/):

. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

This will import the common bashrc.cbcb file into your own bashrc file every time you log in.

Now add this line to your ".bash_profile" file, also located in your home directory:

. ~/.bashrc

This will import your personal bashrc file every time you log in. Now you should have access to most of the locally installed software like "blastall" and "AMOS."

If you want to add any addition commands to your bashrc file, such as setting your default text editor to "vim" or formatting the output of bash commands (eg. "ls"), add the appropriate commands after the imported common files as shown in this example:

. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

alias vi='vim'

alias ls='ls --color'

If you decide you want to change the settings in the common bashrc.cbcb to better suit your personal needs, then please copy and paste its contents into your personal bashrc file. '''Do not modify the common bashrc.cbcb file as it will affect everyone's environment.''' Also check back periodically as people may add common paths for new software.

If you have any other problems, contact staff [at] umiacs.umd.edu or your PI. 

More resources can be found at [https://wiki.umiacs.umd.edu/umiacs/index.php/GettingStarted umiacs wiki]

== CBCB Software Modules ==
To use CBCB Software Modules, see [[CBCB Software Modules]]

== Printing ==
Go to the umiacs wiki to find [https://wiki.umiacs.umd.edu/umiacs/index.php/Printing system-specific guides for printing], and be sure to [https://wiki.umiacs.umd.edu/umiacs/index.php/PrinterQueueNaming add 'nb' to the end of your print queue] to avoid wasting paper printing banners.

== Using the Wiki ==
* [http://en.wikipedia.org/wiki/Wikipedia:Cheatsheet Wiki Formatting Cheatsheet]
* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]

== When You Travel ==

[[Media:CBCB_travel_request_form_oct_2014.pdf‎]] form to fill out to obtain information for travel reimbursement

[[Media:Travel_101_cbcb_revised_4-2013.pdf]] for more detailed travel info

Getting Started in CBCB

2017-09-18T17:14:04Z

Suzantrt: /* Getting Building Access and Room Keys */

You may want to review the following:

[[Media:CBCB-quick-guide.pdf]]

==Getting Building Access and Room Keys==

CBCB is located on the 3rd floor of The Biomolecular Sciences Building identified on campus maps as Building #296. The building is secure and access is gained by either using your UM ID card, guest card or entering the 3-digit code of the person you to visit at the call box on the right side of the front door.

Contact the Center Coordinator, Christine Bogan-Phillips, about gaining card access to the building. She will need the following information:
*An notification email from your sponsor/adviser
*Your Name
*Your 9 Digit University ID number
*Your Contact email

Along with your assigned space and phone numbers, the coordinator will send your information to UMIACS Coordinator Edna Walker who will contact campus security to add you into their system. ''Note: clearance usually takes a number of days, so contact the coordinator as soon as possible.''

If you prefer not to send your information through email feel free to contact the coordinator in person.

You must get your key from the coordinator in person.

Barbara Lewis 
Room 3121
Biomolecular Sciences Bldg #296 
301.405.0368 
blewis[at]umd.edu 

==Research In Progress Seminars==

These seminars are held through the year. For information go to [http://cbcb.umd.edu/node/18625 CBCB Research in Progress]

For a list of our Disk Storage and amount of available space left on each one, see [http://wiki.umiacs.umd.edu/cbcb-private/index.php/Storage wiki.umiacs.umd.edu/cbcb-private/index.php/Storage] 

== Configuring Your Home Directory and Shell ==

WARNING: <code>/fs/sz-user-supported/</code> and <code>/cbcb/software</code> has been deprecated as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. 

We import common settings files that set our path variables to include commonly shared software repositories.

As a start, add the following line to the top of the file called ".bashrc" located in your home directory (/nfshomes/username/):

. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

This will import the common bashrc.cbcb file into your own bashrc file every time you log in.

Now add this line to your ".bash_profile" file, also located in your home directory:

. ~/.bashrc

This will import your personal bashrc file every time you log in. Now you should have access to most of the locally installed software like "blastall" and "AMOS."

If you want to add any addition commands to your bashrc file, such as setting your default text editor to "vim" or formatting the output of bash commands (eg. "ls"), add the appropriate commands after the imported common files as shown in this example:

. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

alias vi='vim'

alias ls='ls --color'

If you decide you want to change the settings in the common bashrc.cbcb to better suit your personal needs, then please copy and paste its contents into your personal bashrc file. '''Do not modify the common bashrc.cbcb file as it will affect everyone's environment.''' Also check back periodically as people may add common paths for new software.

If you have any other problems, contact staff [at] umiacs.umd.edu or your PI. 

More resources can be found at [https://wiki.umiacs.umd.edu/umiacs/index.php/GettingStarted umiacs wiki]

== CBCB Software Modules ==
To use CBCB Software Modules, see [[CBCB Software Modules]]

== Printing ==
Go to the umiacs wiki to find [https://wiki.umiacs.umd.edu/umiacs/index.php/Printing system-specific guides for printing], and be sure to [https://wiki.umiacs.umd.edu/umiacs/index.php/PrinterQueueNaming add 'nb' to the end of your print queue] to avoid wasting paper printing banners.

== Using the Wiki ==
* [http://en.wikipedia.org/wiki/Wikipedia:Cheatsheet Wiki Formatting Cheatsheet]
* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]

== When You Travel ==

[[Media:CBCB_travel_request_form_oct_2014.pdf‎]] form to fill out to obtain information for travel reimbursement

[[Media:Travel_101_cbcb_revised_4-2013.pdf]] for more detailed travel info

Getting Started in CBCB

2017-09-18T16:38:35Z

Suzantrt: /* Getting Building Access and Room Keys */

You may want to review the following:

[[Media:CBCB-quick-guide.pdf]]

==Getting Building Access and Room Keys==

CBCB is located on the 3rd floor of The Biomolecular Sciences Building identified on campus maps as Building #296. The building is secure and access is gained by either using your UM ID card, guest card or entering the 3-digit code of the person you to visit at the call box on the right side of the front door.

Contact the Center Coordinator, Christine Bogan-Phillips, about gaining card access to the building. She will need the following information:
*An notification email from your sponsor/adviser
*Your Name
*Your 9 Digit University ID number
*Your Contact email

Along with your assigned space and phone numbers, the coordinator will send your information to UMIACS Coordinator Edna Walker who will contact campus security to add you into their system. ''Note: clearance usually takes a number of days, so contact the coordinator as soon as possible.''

If you prefer not to send your information through email feel free to contact the coordinator in person.

You must get your key from the coordinator in person.

Barbara Lewis 
Biomolecular Sciences Bldg #296 
301.405.0368 
blewis[at]umd.edu 

==Research In Progress Seminars==

These seminars are held through the year. For information go to [http://cbcb.umd.edu/node/18625 CBCB Research in Progress]

For a list of our Disk Storage and amount of available space left on each one, see [http://wiki.umiacs.umd.edu/cbcb-private/index.php/Storage wiki.umiacs.umd.edu/cbcb-private/index.php/Storage] 

== Configuring Your Home Directory and Shell ==

WARNING: <code>/fs/sz-user-supported/</code> and <code>/cbcb/software</code> has been deprecated as of March 2015. Please move towards using Red Hat 7 machines and [[CBCB Software Modules]]. 

We import common settings files that set our path variables to include commonly shared software repositories.

As a start, add the following line to the top of the file called ".bashrc" located in your home directory (/nfshomes/username/):

. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

This will import the common bashrc.cbcb file into your own bashrc file every time you log in.

Now add this line to your ".bash_profile" file, also located in your home directory:

. ~/.bashrc

This will import your personal bashrc file every time you log in. Now you should have access to most of the locally installed software like "blastall" and "AMOS."

If you want to add any addition commands to your bashrc file, such as setting your default text editor to "vim" or formatting the output of bash commands (eg. "ls"), add the appropriate commands after the imported common files as shown in this example:

. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

alias vi='vim'

alias ls='ls --color'

If you decide you want to change the settings in the common bashrc.cbcb to better suit your personal needs, then please copy and paste its contents into your personal bashrc file. '''Do not modify the common bashrc.cbcb file as it will affect everyone's environment.''' Also check back periodically as people may add common paths for new software.

If you have any other problems, contact staff [at] umiacs.umd.edu or your PI. 

More resources can be found at [https://wiki.umiacs.umd.edu/umiacs/index.php/GettingStarted umiacs wiki]

== CBCB Software Modules ==
To use CBCB Software Modules, see [[CBCB Software Modules]]

== Printing ==
Go to the umiacs wiki to find [https://wiki.umiacs.umd.edu/umiacs/index.php/Printing system-specific guides for printing], and be sure to [https://wiki.umiacs.umd.edu/umiacs/index.php/PrinterQueueNaming add 'nb' to the end of your print queue] to avoid wasting paper printing banners.

== Using the Wiki ==
* [http://en.wikipedia.org/wiki/Wikipedia:Cheatsheet Wiki Formatting Cheatsheet]
* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]

== When You Travel ==

[[Media:CBCB_travel_request_form_oct_2014.pdf‎]] form to fill out to obtain information for travel reimbursement

[[Media:Travel_101_cbcb_revised_4-2013.pdf]] for more detailed travel info