Rhodobacter_sphaeroides.assembly.summary ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Complete genome: CP000143 3188609 Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence. CP000144 943016 Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence. DQ232586 114045 Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence. CP000145 114178 Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence. CP000146 105284 Rhodobacter sphaeroides 2.4.1 plasmid C, complete sequence. CP000147 100828 Rhodobacter sphaeroides 2.4.1 plasmid D, complete sequence. DQ232587 37100 Rhodobacter sphaeroides 2.4.1 plasmid E, partial sequence. total 4603060 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Reads . readLen origMated quakeCorMated quakeCorIter2Mated allpathsCor SuperReads frag 101 2050868 1524532 1496060 1408188 15798+108990(SuperReads+pe_useful) frag.aligned . 1804236 1446349 1483206 1405797 frag.aligned100% . 418202(20.39%) 1244446(81.63%) 1473629(98.50%) 1403337(99.66%) short 101 2050868 1526850 1095774 1313878 291954(sj.cor.clean) short.aligned . 1378727 1123737 1083741 1311110 short.aligned100% . 292885(14.28%) 952499(62.38%) 1079942(98.56%) 1309111(99.64%) frag.aligned.0cvg.count 25 160 491 244 frag.aligned.0cvg.sum 1388 3423 8171 7194 frag.aligned100%.0cvg.count 4528 266 564 342 frag.aligned100%.0cvg.sum 215097 5352 9328 9578 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: Assemblies: :::::::::::::: allpaths.orig . elem min q1 q2 q3 max mean n50 sum scf 34 474 1503 2837 16942 3192334 135566 3192334 4609237 ctg 204 474 4991 15338 33837 106467 22489 42455 4587828 :::::::::::::: CA.orig . elem min q1 q2 q3 max mean n50 sum scf 435 201 2268 7142 10273 76187 7695 8678 3347366 ctg 1574 200 886 1412 2087 13645 1666 1110 2621666 :::::::::::::: CA.quakeCor . elem min q1 q2 q3 max mean n50 sum scf 344 209 1475 2772 9528 53519 6776 1148 2330859 ctg 1110 202 922 1590 2379 10374 1837 202 2038566 :::::::::::::: CA.allpathsCor . elem min q1 q2 q3 max mean n50 sum scf 130 1002 7612 11593 22024 1352519 32767 65690 4259679 ctg 322 294 4179 8874 17868 88519 13162 20211 4238007 :::::::::::::: CA.SuperReads . elem min q1 q2 q3 max mean n50 sum scf 43 300 557 1480 5834 2975504 104613 2975504 4498376 ctg 395 209 2774 6865 15395 83726 11304 22128 4465092 :::::::::::::: SOAPdenovo.orig(K=31) . elem min q1 q2 q3 max mean n50 sum scf 8564 200 233 282 375 26404 421 316 3603172 ctg 8621 200 232 280 367 2178 322 233 2774394 :::::::::::::: SOAPdenovo.orig(K=47) . elem min q1 q2 q3 max mean n50 sum scf 819 200 278 414 826 442471 6087 178294 4985610 ctg 3200 200 466 942 1822 29775 1410 2140 4512094 :::::::::::::: SOAPdenovo.quakeCor(K=31) . elem min q1 q2 q3 max mean n50 sum scf 513 200 276 446 995 1118404 9549 319904 4898499 ctg 2611 200 528 1169 2301 18045 1711 2655 4466490 :::::::::::::: SOAPdenovo.quakeCor(K=47) . elem min q1 q2 q3 max mean n50 sum scf 2524 200 280 421 785 227741 2489 58718 6283303 ctg 5304 200 335 559 993 28830 816 1056 4327159 :::::::::::::: SOAPdenovo.allpathsCor(K=31) . elem min q1 q2 q3 max mean n50 sum scf 173 200 263 492 4756 855933 26462 277811 4577992 ctg 1032 200 899 2690 6006 29329 4345 7793 4483955 :::::::::::::: SOAPdenovo.allpathsCor(K=47) . elem min q1 q2 q3 max mean n50 sum scf 166 200 269 456 2254 1149168 27620 657637 4584991 ctg 1050 200 722 2555 5907 41805 4315 8045 4530344 :::::::::::::: velvet.orig : need to update as well . elem min q1 q2 q3 max mean n50 sum scf 1157 100 221 826 2788 138377 4199 32064 4858572 ctg 2685 100 361 988 2239 26045 1645 2875 4416724 :::::::::::::: velvet.quakeCor . elem min q1 q2 q3 max mean n50 sum scf 450 200 366 812 2725 596525 10422 181187 4690041 ctg 2319 200 549 1175 2392 24642 1834 2767 4253001 :::::::::::::: velvet.allpathsCor . elem min q1 q2 q3 max mean n50 sum scf 178 205 417 1394 5455 770958 25805 353027 4593318 ctg 583 205 963 4376 11669 60714 7724 15665 4503268 :::::::::::::: ABYSS.quakeCor . elem min q1 q2 q3 max mean n50 sum scf 1701 200 610 1324 2739 87855 2991 8859 5087931 ctg 1915 200 595 1345 2805 54734 2595 5872 4969525 :::::::::::::: SGA.orig . elem min q1 q2 q3 max mean n50 sum ctg 3067 200 436 950 1899 29520 1460 2284 4477218