tbl2asn 5.5   arguments:

  -p  Path to files [String]  Optional
  -r  Path for results [String]  Optional
  -i  Single input file [File In]  Optional
  -o  Single output file [File Out]  Optional
  -x  Suffix [String]  Optional
    default = .fsa
  -t  Template file [File In]  Optional
  -s  Read FASTAs as Set [T/F]  Optional
    default = F
  -w  Fasta Set Class (1 Pop, 2 Phy, 3 Mut, 4 Eco) [Integer]
    default = 0
    range from 0 to 4
  -d  Read FASTAs as Delta [T/F]  Optional
    default = F
  -l  Read FASTA+Gap Alignment [T/F]  Optional
    default = F
  -z  Read FASTAs with Gap Lines [T/F]  Optional
    default = F
  -e  Read PHRAP/ACE Format [T/F]  Optional
    default = F
  -g  Genomic Product Set [T/F]  Optional
    default = F
  -a  Accession [String]  Optional
  -C  Genome center tag [String]  Optional
  -n  Organism name [String]  Optional
  -j  Source qualifiers [String]  Optional
  -y  Comment [String]  Optional
  -Y  Comment file [File In]  Optional
  -c  Annotate longest ORF [T/F]  Optional
    default = F
  -m  Allow alternative starts [T/F]  Optional
    default = F
  -k  Set conflict on mismatch [T/F]  Optional
    default = F
  -v  Validate [T/F]  Optional
    default = F
  -b  Generate GenBank file [T/F]  Optional
    default = F
  -q  Seq ID from file name [T/F]  Optional
    default = F
  -u  GenProdSet to NucProtSet [T/F]  Optional
    default = F
  -h  General ID to Note [T/F]  Optional
    default = F
  -B  Alignment Beginning Gap Characters [String]  Optional
  -E  Alignment End Gap Characters [String]  Optional
  -G  Alignment Middle Gap Characters [String]  Optional
  -X  Alignment Missing Characters [String]  Optional
  -M  Alignment Match Characters [String]  Optional
  -P  Alignment Is Proteins [T/F]  Optional
    default = F
  -R  Remote Fetching from ID [T/F]  Optional
    default = F
  -S  Smart Feature Annotation [T/F]  Optional
    default = F
  -Q  Special mRNA Titles [T/F]  Optional
    default = F
  -U  Remove Unnecessary Gene Xref [T/F]  Optional
    default = F
  -L  Force Local protein_id/transcript_id [T/F]  Optional
    default = F
  -T  Remote Taxonomy Lookup [T/F]  Optional
    default = F