UMd2Asm NewAsm [Scaffolds] TotalScaffolds 134612 66141 TotalContigsInScaffolds 194643 120461 MeanContigsPerScaffold 1.45 1.82 MinContigsPerScaffold 1 1 MaxContigsPerScaffold 258 457 TotalBasesInScaffolds 2858277365 2702609713 MeanBasesInScaffolds 21233 40861 MinBasesInScaffolds 205 432 MaxBasesInScaffolds 14616007 26048998 N25ScaffoldBases 4049462 7892915 N50ScaffoldBases 2055041 4340953 N75ScaffoldBases 661293 1925651 ScaffoldAt1000000000 3128828 6115710 ScaffoldAt2000000000 956250 2037084 TotalSpanOfScaffolds 3000296203 2822470272 MeanSpanOfScaffolds 22288 42674 MinScaffoldSpan 205 432 MaxScaffoldSpan 15072136 26554268 IntraScaffoldGaps 60031 54320 2KbScaffolds 31576 12057 2KbScaffoldSpan 2861613899 2751036688 MeanSequenceGapLength 2366 2207 [Top5Scaffolds=contigs,size,span,avgContig,avgGap] 0 258,14616007,15072136,56651,1775 457,26048998,26554268,57000,1108 1 222,10218752,10405580,46030,845 407,21750714,21944974,53442,478 2 195,9891927,10403240,50728,2636 355,21066634,21546874,59343,1357 3 205,9852145,10300284,48059,2197 297,17242334,17864991,58055,2104 4 162,9703963,9850776,59901,912 330,17088677,17407470,51784,969 total 1042,54282794,56032016,52095,1687 1846,103197357,105318577,55903,1152 [Contigs] TotalContigsInScaffolds 194643 120461 TotalBasesInScaffolds 2858277365 2702609713 TotalVarRecords 2618164 2506487 MeanContigLength 14685 22436 MinContigLength 73 65 MaxContigLength 742802 627911 N25ContigBases 138066 149660 N50ContigBases 74604 85030 N75ContigBases 32524 41862 ContigAt1000000000 107377 113260 ContigAt2000000000 40157 43342 [BigContigs_greater_10000] TotalBigContigs 45939 42352 BigContigLength 2546781351 2536133665 MeanBigContigLength 55438 59882 MinBigContig 10000 10000 MaxBigContig 742802 627911 BigContigsPercentBases 89.10 93.84 [SmallContigs] TotalSmallContigs 148704 78109 SmallContigLength 311496014 166476048 MeanSmallContigLength 2095 2131 MinSmallContig 73 65 MaxSmallContig 9999 9999 SmallContigsPercentBases 10.90 6.16 [DegenContigs] TotalDegenContigs 425095 269031 DegenContigLength 416917446 270824509 MeanDegenContigLength 981 1007 MinDegenContig 70 65 MaxDegenContig 21929 33824 DegenPercentBases 14.59 10.02 [Top5Contigs=reads,bases] 0 10137,742802 18122,627911 1 15463,725518 6725,606674 2 12724,706032 5933,604149 3 6945,661067 7082,594326 4 18030,631769 10466,592012 total 63299,3467188 48328,3025072 [UniqueUnitigs] TotalUUnitigs 2145703 1125858 MinUUnitigLength 69 64 MaxUUnitigLength 78607 161926 MeanUUnitigLength 1881 2937 SDUUnitigLength 2852 5873 [Surrogates] TotalSurrogates 265756 92943 SurrogateInstances 282756 97109 SurrogateLength 320310608 113174176 SurrogateInstanceLength 355694318 123235054 UnPlacedSurrReadLen 570006088 291995468 PlacedSurrReadLen 602293115 184492030 MinSurrogateLength 71 66 MaxSurrogateLength 23963 73289 MeanSurrogateLength 1205 1218 SDSurrogateLength 716 876 [Mates] ReadsWithNoMate 2177410(6.18%) 8711921(24.94%) ReadsWithGoodMate 25205306(71.53%) 20676328(59.20%) ReadsWithBadShortMate 3986(0.01%) 276928(0.79%) ReadsWithBadLongMate 69042(0.20%) 46392(0.13%) ReadsWithSameOrientMate 59054(0.17%) 44902(0.13%) ReadsWithOuttieMate 30062(0.09%) 17502(0.05%) ReadsWithBothChaffMate 1815854(5.15%) 2320274(6.64%) ReadsWithChaffMate 2548258(7.23%) 1391964(3.99%) ReadsWithBothDegenMate 867888(2.46%) 436396(1.25%) ReadsWithDegenMate 516438(1.47%) 236464(0.68%) ReadsWithBothSurrMate 11740(0.03%) 1178(0.00%) ReadsWithSurrogateMate 1525430(4.33%) 466302(1.34%) ReadsWithDiffScafMate 407400(1.16%) 300846(0.86%) ReadsWithUnassignedMate 0(0.00%) 0(0.00%) TotalScaffoldLinks 832 711 MeanScaffoldLinkWeight 6.04 12.91 [Reads] TotalReadsInput NA NA TotalUsableReads 35237868 34927397 AvgClearRange 778 800 ContigReads 29419293(83.49%) 29778572(85.26%) BigContigReads 28183374(79.98%) 28872361(82.66%) SmallContigReads 1235919(3.51%) 906211(2.59%) DegenContigReads 1516126(4.30%) 1074367(3.08%) SurrogateReads 1418376(4.03%) 574657(1.65%) PlacedSurrogateReads 718121(2.04%) 221322(0.63%) SingletonReads 3602194(10.22%) 3721123(10.65%) ChaffReads 3602082(10.22%) 3721105(10.65%) [Coverage] ContigsOnly 8.23 8.88 Contigs_Surrogates 8.43 8.99 Contigs_Degens_Surrogates 7.73 8.48 AllReads 9.59 10.34 [TotalBaseCounts] BasesCount NA NA ClearRangeLengthFRG NA NA ClearRangeLengthASM 27406137041 27943626590 SurrogateBaseLength 1172299203 476487498 ContigBaseLength 23511603264 24010874849 DegenBaseLength 1229108706 909505020 SingletonBaseLength 2095418983 2731251253 Contig_SurrBaseLength 24081609352 24302870317 [gcContent] Content 42.13 41.54