----------------------------------------START Fri Jan 23 07:41:03 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore.BUILDING -T -F -L -E /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore.errorLog /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.BARC.CLONEEND.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.BCCAGSC.CLONEEND.qual.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.BCM.CLONEEND.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.BCM.SHOTGUN.qual.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.BCM.WGS.qual.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.CENARGEN.CLONEEND.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.CENARGEN.WGS.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.NISC.SHOTGUN.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.TIGR.CLONEEND.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.TIGR_JCVIJTC.CLONEEND.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.UIUC.CLONEEND.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.UOKNOR.SHOTGUN.qual.frg /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.WUGSC.COLONEEND.frg > /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore.err 2>&1 ----------------------------------------END Fri Jan 23 11:40:23 2009 (14360 seconds) Backing up the gkpStore to beforeTrimming. ---------------------------------------- MANUALLY RESTARTED : spec file given the wrong way ( /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper -a -v /scratch1/bos_taurus/Assembly/2009_0122_CA/bos_taurus.clv -o /scratch1/bos_taurus/Assembly/2009_0122_CA/bt.gkpStore > ! \ /scratch1/bos_taurus/Assembly/2009_0122_CA/bt.gkpStore/bt.vectorClearLoaded.log ) > & /dev/null ---------------------------------------- Backing up the gkpStore to beforeTrimming. ----------------------------------------START Fri Jan 23 13:32:30 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/initialTrim -log /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.initialTrimLog -frg /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.initialTrim.report 2> /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.initialTrim.err ----------------------------------------END Fri Jan 23 14:29:10 2009 (3400 seconds) Backing up the gkpStore to beforePrefixDelete. ----------------------------------------START Fri Jan 23 14:31:58 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/prefixDelete -log /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.prefixDeleteLog -frg /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.prefixDelete.report 2> /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.prefixDelete.err ----------------------------------------END Fri Jan 23 14:54:21 2009 (1380 seconds) ----------------------------------------START Fri Jan 23 14:54:21 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl -B -C -v -m 22 -memory 24000 -threads 30 -c 0 -L 60 -s /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore:obt -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-mercounts/bt-C-ms22-cm0 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-mercounts/meryl.out 2>&1 ----------------------------------------END Sat Jan 24 02:09:40 2009 (40519 seconds) ----------------------------------------START Sat Jan 24 02:09:40 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl -Dt -n 60 -s /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-mercounts/bt-C-ms22-cm0 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-mercounts/bt.nmers.ovl.fasta /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()--AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()--AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()--AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------END Sat Jan 24 03:32:44 2009 (4984 seconds) /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()--AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()--AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()--AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------START Sat Jan 24 03:32:44 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl -Dt -n 200 -s /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-mercounts/bt-C-ms22-cm0 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-mercounts/bt.nmers.obt.fasta /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()--AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/meryl: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------END Sat Jan 24 03:36:06 2009 (202 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0001.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0002.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 3 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0003.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 4 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0004.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 5 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0005.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 6 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0006.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 7 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0007.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 8 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0008.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 9 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0009.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 10 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0010.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 11 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0011.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 12 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0012.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 13 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0013.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 14 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0014.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 15 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0015.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 16 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0016.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 17 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0017.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 18 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0018.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:06 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:06 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 19 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0019.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 20 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0020.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 21 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0021.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 22 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0022.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 23 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0023.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 24 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0024.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 25 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0025.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 26 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0026.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 27 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0027.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 28 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0028.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 29 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0029.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 30 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0030.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 31 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0031.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 32 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0032.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 33 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0033.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 34 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0034.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 35 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0035.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 36 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0036.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 37 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0037.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 38 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0038.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 39 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0039.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 40 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0040.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 41 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0041.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 42 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0042.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 43 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0043.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 44 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0044.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 45 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0045.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 46 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0046.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 47 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0047.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:07 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:07 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 48 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0048.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 49 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0049.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 50 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0050.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 51 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0051.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 52 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0052.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 53 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0053.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 54 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0054.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 55 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0055.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 56 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0056.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 57 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0057.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 58 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0058.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 59 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0059.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 60 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0060.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 61 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0061.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 62 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0062.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 63 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0063.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 64 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0064.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 65 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0065.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 66 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0066.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 67 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0067.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 68 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0068.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 69 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0069.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 70 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0070.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 71 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0071.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 72 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0072.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 73 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0073.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 74 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0074.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 75 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0075.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:08 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 76 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0076.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 77 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0077.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 78 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0078.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 79 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0079.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 80 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0080.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 81 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0081.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 82 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0082.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 83 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0083.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 84 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0084.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 85 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0085.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 86 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0086.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 87 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0087.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 88 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0088.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 89 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0089.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 90 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0090.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 91 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0091.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 92 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0092.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 93 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0093.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 94 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0094.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 95 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0095.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 96 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0096.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 97 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0097.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 98 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0098.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 99 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0099.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 100 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0100.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 101 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0101.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 102 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0102.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 103 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0103.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:09 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:09 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 104 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0104.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:10 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:10 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 105 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0105.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:10 2009 (0 seconds) ----------------------------------------START Sat Jan 24 03:36:10 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.sh 106 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/overlap.0106.out 2>&1 ----------------------------------------END Sat Jan 24 03:36:10 2009 (1000000 seconds) !!! this is an approximate number : between 360,000 amd 1,800,000 /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h00000001r00000000 failed, job index 1. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h01000001r00000000 failed, job index 2. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h02000001r00000000 failed, job index 3. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h03000001r00000000 failed, job index 4. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h04000001r00000000 failed, job index 5. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h05000001r00000000 failed, job index 6. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h06000001r00000000 failed, job index 7. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h07000001r00000000 failed, job index 8. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h07000001r07500000 failed, job index 9. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h08000001r00000000 failed, job index 10. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h08000001r07500000 failed, job index 11. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h09000001r00000000 failed, job index 12. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h09000001r07500000 failed, job index 13. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h10000001r00000000 failed, job index 14. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h10000001r07500000 failed, job index 15. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h11000001r00000000 failed, job index 16. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h11000001r07500000 failed, job index 17. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h12000001r00000000 failed, job index 18. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h12000001r07500000 failed, job index 19. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h13000001r00000000 failed, job index 20. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h13000001r07500000 failed, job index 21. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h14000001r00000000 failed, job index 22. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h14000001r07500000 failed, job index 23. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h15000001r00000000 failed, job index 24. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h15000001r07500000 failed, job index 25. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h15000001r15000000 failed, job index 26. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h16000001r00000000 failed, job index 27. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h16000001r07500000 failed, job index 28. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h16000001r15000000 failed, job index 29. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h17000001r00000000 failed, job index 30. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h17000001r07500000 failed, job index 31. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h17000001r15000000 failed, job index 32. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h18000001r00000000 failed, job index 33. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h18000001r07500000 failed, job index 34. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h18000001r15000000 failed, job index 35. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h19000001r00000000 failed, job index 36. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h19000001r07500000 failed, job index 37. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h19000001r15000000 failed, job index 38. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h20000001r00000000 failed, job index 39. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h20000001r07500000 failed, job index 40. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h20000001r15000000 failed, job index 41. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h21000001r00000000 failed, job index 42. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h21000001r07500000 failed, job index 43. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h21000001r15000000 failed, job index 44. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h22000001r00000000 failed, job index 45. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h22000001r07500000 failed, job index 46. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h22000001r15000000 failed, job index 47. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h22000001r22500000 failed, job index 48. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h23000001r00000000 failed, job index 49. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h23000001r07500000 failed, job index 50. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h23000001r15000000 failed, job index 51. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h23000001r22500000 failed, job index 52. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h24000001r00000000 failed, job index 53. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h24000001r07500000 failed, job index 54. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h24000001r15000000 failed, job index 55. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h24000001r22500000 failed, job index 56. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h25000001r00000000 failed, job index 57. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h25000001r07500000 failed, job index 58. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h25000001r15000000 failed, job index 59. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h25000001r22500000 failed, job index 60. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h26000001r00000000 failed, job index 61. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h26000001r07500000 failed, job index 62. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h26000001r15000000 failed, job index 63. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h26000001r22500000 failed, job index 64. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h27000001r00000000 failed, job index 65. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h27000001r07500000 failed, job index 66. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h27000001r15000000 failed, job index 67. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h27000001r22500000 failed, job index 68. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h28000001r00000000 failed, job index 69. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h28000001r07500000 failed, job index 70. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h28000001r15000000 failed, job index 71. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h28000001r22500000 failed, job index 72. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h29000001r00000000 failed, job index 73. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h29000001r07500000 failed, job index 74. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h29000001r15000000 failed, job index 75. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h29000001r22500000 failed, job index 76. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h30000001r00000000 failed, job index 77. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h30000001r07500000 failed, job index 78. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h30000001r15000000 failed, job index 79. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h30000001r22500000 failed, job index 80. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h30000001r30000000 failed, job index 81. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h31000001r00000000 failed, job index 82. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h31000001r07500000 failed, job index 83. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h31000001r15000000 failed, job index 84. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h31000001r22500000 failed, job index 85. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h31000001r30000000 failed, job index 86. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h32000001r00000000 failed, job index 87. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h32000001r07500000 failed, job index 88. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h32000001r15000000 failed, job index 89. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h32000001r22500000 failed, job index 90. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h32000001r30000000 failed, job index 91. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h33000001r00000000 failed, job index 92. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h33000001r07500000 failed, job index 93. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h33000001r15000000 failed, job index 94. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h33000001r22500000 failed, job index 95. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h33000001r30000000 failed, job index 96. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h34000001r00000000 failed, job index 97. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h34000001r07500000 failed, job index 98. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h34000001r15000000 failed, job index 99. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h34000001r22500000 failed, job index 100. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h34000001r30000000 failed, job index 101. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h35000001r00000000 failed, job index 102. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h35000001r07500000 failed, job index 103. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h35000001r15000000 failed, job index 104. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h35000001r22500000 failed, job index 105. /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap/00000001/h35000001r30000000 failed, job index 106. step OverlapTrim failed with '106 overlapper jobs failed.' ----------- DIED: more 0-overlaptrim-overlap/overlap.0001.out => 16GB run module requires STRING_NUM_BITS > 19. ----------- change 16G to 4G, paralelize it manually: run 106 jobs on 14 processors ----------- perl -e 'foreach ("0001".."0106") { /^0+(\d+)/; print "/scratch1/bos_taurus/Assembly/2009_0122_CA/0-overlaptrim-overlap/overlap.sh $1 > \ ----------- /scratch1/bos_taurus/Assembly/2009_0122_CA/0-overlaptrim-overlap/overlap.$_.out \n";}' > ! myOverlap.sh ----------- manually run myOverlap.sh* (submitted using the at command) ----------------------------------------START Mon Jan 26 10:08:09 2009 find /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim-overlap -follow -name \*ovb.gz -print > /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.obtStore.list ----------------------------------------END Mon Jan 26 10:08:10 2009 (1 seconds) ----------------------------------------START Mon Jan 26 10:08:10 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/overlapStore -O -c /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.obtStore.BUILDING -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -M 1024 -L /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.obtStore.list > /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.obtStore.err 2>&1 ----------------------------------------END Mon Jan 26 12:22:20 2009 (8050 seconds) ----------------------------------------START Mon Jan 26 12:22:20 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/consolidate -ovs /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.obtStore > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.ovl.consolidated /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/consolidate: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/consolidate: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/consolidate: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------END Mon Jan 26 12:57:20 2009 (2100 seconds) Backing up the gkpStore to beforeTrimMerge. ----------------------------------------START Mon Jan 26 13:01:10 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/merge-trimming -log /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.mergeLog -frg /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -ovl /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.ovl.consolidated > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.merge.err 2>&1 ----------------------------------------END Mon Jan 26 13:34:38 2009 (2008 seconds) Backing up the gkpStore to beforeChimera. ----------------------------------------START Mon Jan 26 13:35:23 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/chimera -gkp /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -ovs /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.obtStore -summary /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.chimera.summary -report /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.chimera.report > /scratch1/bos_taurus/Assembly/2009_0122_CA/./0-overlaptrim/bt.chimera.err 2>&1 ----------------------------------------END Mon Jan 26 14:41:30 2009 (3967 seconds) Backing up the gkpStore to afterTrimming. Stop requested after 'overlapBasedTrimming'. ----------------------------------------START CONCURRENT Mon Jan 26 17:32:08 2009 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0001.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0002.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 3 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0003.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 4 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0004.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 5 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0005.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 6 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0006.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 7 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0007.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 8 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0008.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 9 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0009.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 10 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0010.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 11 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0011.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 12 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0012.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 13 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0013.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 14 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0014.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 15 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0015.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 16 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0016.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 17 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0017.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 18 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0018.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 19 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0019.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 20 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0020.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 21 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0021.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 22 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0022.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 23 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0023.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 24 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0024.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 25 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0025.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 26 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0026.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 27 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0027.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 28 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0028.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 29 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0029.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 30 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0030.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 31 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0031.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 32 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0032.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 33 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0033.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 34 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0034.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 35 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0035.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 36 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0036.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 37 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0037.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 38 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0038.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 39 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0039.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 40 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0040.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 41 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0041.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 42 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0042.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 43 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0043.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 44 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0044.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 45 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0045.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 46 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0046.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 47 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0047.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 48 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0048.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 49 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0049.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 50 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0050.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 51 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0051.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 52 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0052.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 53 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0053.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 54 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0054.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 55 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0055.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 56 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0056.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 57 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0057.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 58 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0058.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 59 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0059.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 60 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0060.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 61 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0061.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 62 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0062.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 63 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0063.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 64 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0064.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 65 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0065.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 66 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0066.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 67 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0067.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 68 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0068.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 69 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0069.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 70 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0070.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 71 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0071.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 72 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0072.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 73 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0073.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 74 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0074.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 75 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0075.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 76 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0076.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 77 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0077.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 78 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0078.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 79 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0079.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 80 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0080.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 81 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0081.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 82 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0082.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 83 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0083.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 84 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0084.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 85 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0085.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 86 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0086.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 87 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0087.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 88 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0088.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 89 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0089.out 2>&1 /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.sh 90 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper/overlap.0090.out 2>&1 ----------------------------------------END CONCURRENT Wed Jan 28 08:30:22 2009 (140294 seconds) ----------------------------------------START Wed Jan 28 08:30:22 2009 find /scratch1/bos_taurus/Assembly/2009_0122_CA/./1-overlapper -name \*ovb.gz -print > /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.ovlStore.list ----------------------------------------END Wed Jan 28 08:30:22 2009 (0 seconds) ----------------------------------------START Wed Jan 28 08:30:22 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/overlapStore -c /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.ovlStore.BUILDING -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -M 1024 -L /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.ovlStore.list > /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.ovlStore.err 2>&1 ----------------------------------------END Wed Jan 28 09:50:53 2009 (4831 seconds) Stop requested after 'overlapper'. ---------------------------------------START CONCURRENT Wed Jan 28 13:24:53 2009 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0001.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0002.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 3 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0003.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 4 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0004.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 5 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0005.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 6 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0006.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 7 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0007.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 8 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0008.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 9 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0009.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 10 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0010.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 11 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0011.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 12 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0012.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 13 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0013.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 14 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0014.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 15 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0015.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 16 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0016.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 17 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0017.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 18 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0018.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 19 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0019.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 20 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0020.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 21 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0021.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 22 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0022.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 23 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0023.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 24 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0024.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 25 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0025.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 26 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0026.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 27 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0027.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 28 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0028.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 29 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0029.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 30 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0030.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 31 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0031.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 32 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0032.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 33 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0033.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 34 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0034.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 35 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0035.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 36 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0036.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 37 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0037.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 38 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0038.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 39 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0039.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 40 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0040.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 41 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0041.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 42 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0042.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 43 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0043.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 44 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0044.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 45 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0045.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 46 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0046.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 47 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0047.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 48 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0048.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 49 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0049.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 50 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0050.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 51 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0051.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 52 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0052.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 53 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0053.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 54 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0054.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 55 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0055.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 56 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0056.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 57 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0057.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 58 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0058.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 59 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0059.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 60 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0060.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 61 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0061.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 62 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0062.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 63 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0063.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 64 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0064.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 65 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0065.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 66 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0066.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 67 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0067.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 68 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0068.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 69 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0069.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 70 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0070.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 71 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0071.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 72 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0072.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 73 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0073.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 74 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0074.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 75 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0075.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 76 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0076.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 77 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0077.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 78 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0078.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 79 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0079.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 80 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0080.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 81 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0081.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 82 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0082.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 83 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0083.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 84 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0084.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 85 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0085.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 86 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0086.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 87 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0087.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 88 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0088.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 89 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0089.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 90 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0090.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 91 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0091.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 92 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0092.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 93 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0093.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 94 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0094.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 95 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0095.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 96 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0096.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 97 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0097.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 98 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0098.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 99 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0099.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 100 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0100.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 101 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0101.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 102 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0102.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 103 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0103.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 104 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0104.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 105 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0105.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 106 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0106.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 107 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0107.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 108 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0108.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 109 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0109.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 110 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0110.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 111 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0111.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 112 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0112.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 113 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0113.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 114 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0114.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 115 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0115.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 116 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0116.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 117 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0117.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 118 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0118.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 119 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0119.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 120 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0120.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 121 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0121.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 122 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0122.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 123 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0123.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 124 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0124.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 125 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0125.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 126 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0126.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 127 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0127.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 128 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0128.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 129 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0129.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 130 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0130.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 131 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0131.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 132 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0132.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 133 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0133.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 134 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0134.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 135 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0135.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 136 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0136.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 137 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0137.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 138 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0138.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 139 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0139.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 140 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0140.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 141 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0141.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 142 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0142.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 143 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0143.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 144 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0144.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 145 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0145.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 146 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0146.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 147 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0147.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 148 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0148.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 149 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0149.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 150 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0150.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 151 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0151.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 152 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0152.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 153 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0153.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 154 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0154.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 155 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0155.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 156 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0156.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 157 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0157.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 158 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0158.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 159 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0159.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 160 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0160.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 161 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0161.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 162 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0162.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 163 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0163.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 164 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0164.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 165 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0165.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 166 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0166.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 167 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0167.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 168 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0168.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 169 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0169.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 170 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0170.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 171 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0171.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 172 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0172.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 173 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0173.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 174 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0174.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 175 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0175.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 176 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0176.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 177 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0177.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 178 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0178.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 179 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0179.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 180 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0180.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 181 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0181.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 182 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0182.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 183 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0183.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 184 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0184.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 185 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0185.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 186 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0186.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 187 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0187.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 188 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0188.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 189 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0189.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 190 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0190.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 191 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0191.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 192 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0192.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 193 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0193.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 194 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0194.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 195 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0195.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 196 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0196.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 197 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0197.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 198 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0198.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 199 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0199.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 200 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0200.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 201 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0201.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 202 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0202.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 203 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0203.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 204 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0204.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 205 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0205.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 206 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0206.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 207 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0207.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 208 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0208.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 209 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0209.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 210 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0210.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 211 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0211.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 212 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0212.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 213 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0213.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 214 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0214.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 215 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0215.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 216 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0216.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 217 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0217.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 218 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0218.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 219 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0219.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 220 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0220.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 221 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0221.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 222 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0222.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 223 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0223.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 224 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0224.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 225 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0225.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 226 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0226.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 227 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0227.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 228 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0228.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 229 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0229.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 230 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0230.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 231 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0231.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 232 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0232.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 233 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0233.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 234 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0234.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 235 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0235.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 236 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0236.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 237 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0237.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 238 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0238.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 239 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0239.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 240 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0240.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 241 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0241.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 242 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0242.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 243 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0243.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 244 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0244.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 245 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0245.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 246 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0246.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 247 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0247.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 248 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0248.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 249 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0249.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 250 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0250.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 251 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0251.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 252 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0252.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 253 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0253.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 254 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0254.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 255 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0255.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 256 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0256.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 257 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0257.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 258 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0258.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 259 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0259.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 260 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0260.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 261 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0261.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 262 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0262.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 263 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0263.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 264 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0264.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 265 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0265.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 266 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0266.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 267 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0267.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 268 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0268.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 269 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0269.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 270 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0270.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 271 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0271.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 272 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0272.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 273 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0273.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 274 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0274.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 275 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0275.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 276 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0276.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 277 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0277.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 278 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0278.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 279 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0279.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 280 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0280.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 281 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0281.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 282 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0282.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 283 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0283.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 284 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0284.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 285 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0285.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 286 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0286.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 287 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0287.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 288 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0288.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 289 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0289.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 290 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0290.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 291 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0291.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 292 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0292.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 293 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0293.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 294 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0294.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 295 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0295.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 296 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0296.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 297 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0297.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 298 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0298.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 299 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0299.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 300 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0300.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 301 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0301.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 302 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0302.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 303 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0303.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 304 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0304.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 305 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0305.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 306 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0306.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 307 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0307.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 308 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0308.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 309 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0309.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 310 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0310.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 311 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0311.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 312 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0312.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 313 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0313.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 314 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0314.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 315 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0315.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 316 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0316.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 317 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0317.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 318 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0318.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 319 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0319.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 320 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0320.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 321 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0321.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 322 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0322.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 323 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0323.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 324 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0324.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 325 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0325.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 326 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0326.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 327 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0327.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 328 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0328.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 329 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0329.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 330 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0330.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 331 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0331.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 332 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0332.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 333 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0333.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 334 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0334.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 335 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0335.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 336 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0336.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 337 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0337.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 338 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0338.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 339 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0339.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 340 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0340.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 341 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0341.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 342 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0342.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 343 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0343.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 344 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0344.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 345 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0345.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 346 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0346.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 347 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0347.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 348 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0348.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 349 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0349.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 350 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0350.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 351 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0351.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 352 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0352.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 353 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0353.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/frgcorr.sh 354 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0354.err 2>&1 ----------------------------------------END CONCURRENT Wed Jan 28 16:08:28 2009 (9815 seconds) ----------------------------------------START Wed Jan 28 16:08:28 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/cat-corrects -L /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/cat-corrects.frgcorrlist -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/bt.frgcorr > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/cat-corrects.err 2>&1 ----------------------------------------END Wed Jan 28 16:09:25 2009 (57 seconds) ----------------------------------------START CONCURRENT Wed Jan 28 16:09:25 2009 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0001.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0002.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 3 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0003.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 4 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0004.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 5 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0005.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 6 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0006.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 7 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0007.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 8 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0008.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 9 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0009.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 10 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0010.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 11 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0011.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 12 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0012.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 13 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0013.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 14 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0014.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 15 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0015.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 16 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0016.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 17 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0017.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 18 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0018.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 19 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0019.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 20 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0020.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 21 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0021.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 22 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0022.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 23 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0023.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 24 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0024.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 25 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0025.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 26 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0026.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 27 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0027.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 28 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0028.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 29 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0029.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 30 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0030.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 31 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0031.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 32 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0032.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 33 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0033.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 34 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0034.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 35 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0035.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 36 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0036.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 37 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0037.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 38 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0038.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 39 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0039.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 40 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0040.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 41 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0041.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 42 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0042.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 43 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0043.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 44 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0044.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 45 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0045.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 46 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0046.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 47 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0047.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 48 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0048.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 49 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0049.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 50 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0050.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 51 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0051.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 52 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0052.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 53 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0053.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 54 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0054.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 55 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0055.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 56 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0056.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 57 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0057.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 58 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0058.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 59 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0059.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 60 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0060.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 61 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0061.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 62 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0062.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 63 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0063.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 64 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0064.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 65 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0065.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 66 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0066.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 67 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0067.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 68 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0068.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 69 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0069.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 70 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0070.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 71 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0071.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 72 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0072.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 73 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0073.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 74 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0074.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 75 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0075.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 76 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0076.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 77 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0077.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 78 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0078.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 79 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0079.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 80 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0080.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 81 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0081.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 82 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0082.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 83 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0083.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 84 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0084.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 85 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0085.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 86 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0086.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 87 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0087.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 88 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0088.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 89 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0089.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 90 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0090.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 91 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0091.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 92 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0092.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 93 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0093.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 94 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0094.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 95 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0095.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 96 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0096.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 97 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0097.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 98 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0098.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 99 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0099.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 100 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0100.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 101 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0101.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 102 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0102.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 103 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0103.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 104 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0104.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 105 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0105.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 106 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0106.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 107 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0107.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 108 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0108.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 109 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0109.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 110 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0110.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 111 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0111.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 112 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0112.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 113 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0113.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 114 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0114.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 115 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0115.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 116 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0116.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 117 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0117.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 118 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0118.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 119 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0119.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 120 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0120.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 121 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0121.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 122 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0122.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 123 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0123.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 124 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0124.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 125 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0125.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 126 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0126.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 127 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0127.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 128 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0128.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 129 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0129.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 130 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0130.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 131 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0131.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 132 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0132.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 133 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0133.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 134 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0134.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 135 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0135.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 136 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0136.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 137 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0137.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 138 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0138.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 139 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0139.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 140 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0140.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 141 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0141.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 142 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0142.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 143 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0143.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 144 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0144.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 145 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0145.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 146 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0146.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 147 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0147.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 148 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0148.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 149 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0149.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 150 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0150.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 151 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0151.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 152 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0152.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 153 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0153.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 154 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0154.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 155 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0155.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 156 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0156.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 157 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0157.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 158 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0158.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 159 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0159.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 160 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0160.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 161 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0161.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 162 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0162.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 163 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0163.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 164 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0164.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 165 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0165.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 166 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0166.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 167 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0167.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 168 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0168.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 169 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0169.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 170 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0170.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 171 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0171.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 172 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0172.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 173 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0173.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 174 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0174.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 175 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0175.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 176 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0176.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 177 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0177.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 178 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0178.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 179 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0179.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 180 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0180.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 181 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0181.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 182 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0182.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 183 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0183.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 184 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0184.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 185 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0185.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 186 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0186.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 187 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0187.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 188 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0188.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 189 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0189.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 190 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0190.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 191 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0191.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 192 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0192.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 193 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0193.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 194 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0194.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 195 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0195.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 196 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0196.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 197 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0197.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 198 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0198.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 199 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0199.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 200 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0200.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 201 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0201.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 202 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0202.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 203 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0203.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 204 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0204.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 205 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0205.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 206 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0206.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 207 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0207.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 208 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0208.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 209 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0209.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 210 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0210.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 211 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0211.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 212 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0212.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 213 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0213.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 214 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0214.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 215 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0215.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 216 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0216.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 217 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0217.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 218 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0218.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 219 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0219.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 220 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0220.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 221 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0221.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 222 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0222.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 223 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0223.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 224 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0224.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 225 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0225.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 226 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0226.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 227 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0227.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 228 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0228.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 229 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0229.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 230 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0230.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 231 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0231.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 232 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0232.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 233 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0233.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 234 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0234.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 235 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0235.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 236 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0236.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 237 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0237.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 238 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0238.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 239 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0239.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 240 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0240.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 241 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0241.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 242 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0242.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 243 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0243.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 244 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0244.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 245 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0245.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 246 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0246.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 247 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0247.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 248 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0248.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 249 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0249.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 250 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0250.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 251 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0251.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 252 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0252.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 253 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0253.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 254 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0254.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 255 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0255.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 256 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0256.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 257 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0257.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 258 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0258.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 259 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0259.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 260 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0260.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 261 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0261.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 262 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0262.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 263 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0263.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 264 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0264.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 265 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0265.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 266 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0266.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 267 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0267.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 268 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0268.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 269 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0269.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 270 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0270.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 271 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0271.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 272 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0272.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 273 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0273.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 274 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0274.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 275 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0275.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 276 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0276.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 277 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0277.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 278 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0278.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 279 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0279.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 280 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0280.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 281 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0281.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 282 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0282.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 283 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0283.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 284 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0284.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 285 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0285.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 286 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0286.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 287 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0287.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 288 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0288.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 289 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0289.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 290 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0290.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 291 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0291.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 292 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0292.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 293 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0293.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 294 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0294.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 295 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0295.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 296 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0296.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 297 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0297.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 298 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0298.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 299 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0299.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 300 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0300.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 301 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0301.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 302 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0302.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 303 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0303.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 304 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0304.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 305 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0305.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 306 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0306.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 307 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0307.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 308 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0308.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 309 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0309.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 310 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0310.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 311 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0311.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 312 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0312.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 313 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0313.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 314 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0314.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 315 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0315.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 316 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0316.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 317 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0317.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 318 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0318.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 319 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0319.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 320 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0320.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 321 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0321.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 322 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0322.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 323 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0323.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 324 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0324.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 325 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0325.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 326 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0326.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 327 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0327.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 328 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0328.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 329 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0329.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 330 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0330.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 331 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0331.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 332 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0332.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 333 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0333.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 334 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0334.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 335 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0335.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 336 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0336.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 337 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0337.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 338 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0338.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 339 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0339.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 340 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0340.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 341 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0341.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 342 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0342.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 343 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0343.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 344 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0344.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 345 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0345.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 346 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0346.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 347 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0347.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 348 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0348.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 349 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0349.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 350 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0350.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 351 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0351.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 352 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0352.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 353 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0353.err 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/ovlcorr.sh 354 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/0354.err 2>&1 ----------------------------------------END CONCURRENT Wed Jan 28 19:16:05 2009 (11200 seconds) ----------------------------------------START Wed Jan 28 19:16:05 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/cat-erates -L /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/cat-erates.eratelist -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/bt.erates > /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/cat-erates.err 2>&1 ----------------------------------------END Wed Jan 28 19:22:35 2009 (390 seconds) ----------------------------------------START Wed Jan 28 19:22:35 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/overlapStore -u /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.ovlStore /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/bt.erates> /scratch1/bos_taurus/Assembly/2009_0122_CA/./3-overlapcorrection/overlapStore-update-erates.err 2>&1 ----------------------------------------END Wed Jan 28 20:35:47 2009 (4392 seconds) /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------START Wed Jan 28 20:36:20 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/unitigger -k -B 276162 -d 1 -x 1 -z 10 -j 5 -U 1 -e 0.015 -F /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./4-unitigger/bt -I /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.ovlStore > /scratch1/bos_taurus/Assembly/2009_0122_CA/./4-unitigger/unitigger.err 2>&1 ----------------------------------------END Thu Jan 29 02:15:01 2009 (20321 seconds) Stop requested after 'unitigger'. cgwDistanceSampleSize = 1000 cnsConcurrency = 15 cnsMinFrags = 200000 doOverlapTrimming = 1 frgCorrBatchSize = 100000 frgCorrConcurrency = 15 merylMemory = 24000 merylThreads = 15 obtMerThreshold = 200 obtOverlapper = ovl ovlConcurrency = 8 ovlCorrBatchSize = 100000 ovlCorrConcurrency = 15 ovlHashBlockSize = 1200000 ovlMemory = 8GB --hashload 0.8 --hashstrings 400000 ovlMerThreshold = 500 ovlOverlapper = ovl ovlRefBlockSize = 7200000 ovlThreads = 2 unitigger = utg useGrid = 0 utgErrorRate = 0.015 vectorIntersect = bos_taurus.clv /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------START Thu Jan 29 07:58:00 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper -P /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt.partFile /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore > /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt.partitioned.err 2>&1 ----------------------------------------END Thu Jan 29 09:07:44 2009 (4184 seconds) ----------------------------------------START CONCURRENT Thu Jan 29 09:07:44 2009 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 1 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 2 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 3 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 4 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 5 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 6 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 7 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 8 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 9 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 10 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 11 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 12 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 13 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 14 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 15 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 16 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 17 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 18 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 19 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 20 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 21 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 22 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 23 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 24 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 25 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 26 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 27 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 28 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 29 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 30 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 31 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 32 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 33 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 34 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 35 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 36 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 37 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 38 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 39 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 40 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 41 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 42 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 43 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 44 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 45 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 46 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 47 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 48 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 49 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 50 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 51 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 52 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 53 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 54 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 55 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 56 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 57 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 58 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 59 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 60 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 61 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 62 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 63 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 64 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 65 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 66 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 67 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 68 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 69 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 70 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 71 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 72 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 73 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 74 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 75 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 76 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 77 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 78 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 79 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 80 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 81 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 82 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 83 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 84 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 85 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 86 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 87 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 88 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 89 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 90 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 91 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 92 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 93 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 94 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 95 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 96 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 97 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 98 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 99 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 100 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 101 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 102 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 103 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 104 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 105 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 106 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 107 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 108 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 109 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 110 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 111 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 112 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 113 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 114 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 115 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 116 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 117 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 118 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 119 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 120 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 121 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 122 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 123 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 124 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 125 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 126 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/consensus.sh 127 > /dev/null 2>&1 ----------------------------------------END CONCURRENT Thu Jan 29 10:56:53 2009 (6549 seconds) ----------------------------------------START Thu Jan 29 10:57:06 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/cgw -j 1 -k 5 -r 5 -s 0 -S 0 -G -z -m 1000 -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-0-CGW/bt /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_001.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_002.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_003.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_004.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_005.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_006.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_007.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_008.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_009.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_010.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_011.cgi /scratch1/bos_taur us/Assembly/2009_0122_CA/./5-consensus/bt_012.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_013.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_014.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_015.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_016.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_017.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_018.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_019.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_020.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_021.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_022.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_023.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_024.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_025.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensu s/bt_026.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_027.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_028.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_029.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_030.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_031.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_032.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_033.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_034.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_035.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_036.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_037.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_038.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_039.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_040.cgi /scratch1/bos_taurus/Ass embly/2009_0122_CA/./5-consensus/bt_041.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_042.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_043.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_044.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_045.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_046.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_047.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_048.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_049.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_050.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_051.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_052.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_053.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_054.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_0 55.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_056.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_057.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_058.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_059.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_060.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_061.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_062.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_063.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_064.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_065.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_066.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_067.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_068.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_069.cgi /scratch1/bos_taurus/Assembly/ 2009_0122_CA/./5-consensus/bt_070.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_071.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_072.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_073.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_074.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_075.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_076.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_077.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_078.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_079.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_080.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_081.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_082.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_083.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_084.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_085.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_086.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_087.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_088.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_089.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_090.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_091.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_092.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_093.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_094.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_095.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_096.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_097.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_098.cgi /scratch1/bos_taurus/Assembly/2009_0 122_CA/./5-consensus/bt_099.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_100.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_101.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_102.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_103.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_104.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_105.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_106.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_107.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_108.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_109.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_110.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_111.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_112.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_113.cgi /scra tch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_114.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_115.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_116.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_117.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_118.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_119.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_120.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_121.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_122.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_123.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_124.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_125.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_126.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_127.cgi > /scratch1/bos_taurus/Assembly/2009_0122 _CA/./7-0-CGW/cgw.out 2>&1 ----------------------------------------END Fri Jan 30 00:09:35 2009 (47549 seconds) Found 157080 scaffolds in 7-1-ECR checkpoint number 7. ----------------------------------------START Fri Jan 30 00:10:10 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 7 -c bt -b 000000 -e 19636 -i 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-1-ECR/extendClearRanges-scaffold.000000.err 2>&1 ----------------------------------------END Fri Jan 30 00:26:17 2009 (967 seconds) ----------------------------------------START Fri Jan 30 00:26:17 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 8 -c bt -b 019636 -e 39272 -i 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-1-ECR/extendClearRanges-scaffold.019636.err 2>&1 ----------------------------------------END Fri Jan 30 00:45:16 2009 (1139 seconds) ----------------------------------------START Fri Jan 30 00:45:16 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 9 -c bt -b 039272 -e 58908 -i 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-1-ECR/extendClearRanges-scaffold.039272.err 2>&1 ----------------------------------------END Fri Jan 30 01:01:50 2009 (994 seconds) ----------------------------------------START Fri Jan 30 01:01:50 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 10 -c bt -b 058908 -e 78544 -i 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-1-ECR/extendClearRanges-scaffold.058908.err 2>&1 ----------------------------------------END Fri Jan 30 01:23:46 2009 (1316 seconds) ----------------------------------------START Fri Jan 30 01:23:46 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 11 -c bt -b 078544 -e 98180 -i 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-1-ECR/extendClearRanges-scaffold.078544.err 2>&1 ----------------------------------------END Fri Jan 30 01:46:42 2009 (1376 seconds) ----------------------------------------START Fri Jan 30 01:46:42 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 12 -c bt -b 098180 -e 117816 -i 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-1-ECR/extendClearRanges-scaffold.098180.err 2>&1 ----------------------------------------END Fri Jan 30 02:13:58 2009 (1636 seconds) ----------------------------------------START Fri Jan 30 02:13:58 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 13 -c bt -b 117816 -e 137452 -i 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-1-ECR/extendClearRanges-scaffold.117816.err 2>&1 ----------------------------------------END Fri Jan 30 02:59:40 2009 (2742 seconds) ----------------------------------------START Fri Jan 30 02:59:40 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 14 -c bt -b 137452 -e 157080 -i 1 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-1-ECR/extendClearRanges-scaffold.137452.err 2>&1 ----------------------------------------END Fri Jan 30 16:52:54 2009 (49994 seconds) ----------------------------------------START Fri Jan 30 16:52:55 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/cgw -y -R 15 -N 3 -j 1 -k 5 -r 5 -s 0 -S 0 -G -z -m 1000 -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-2-CGW/bt /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_001.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_002.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_003.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_004.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_005.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_006.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_007.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_008.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_009.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_010.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_011.cgi /scra tch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_012.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_013.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_014.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_015.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_016.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_017.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_018.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_019.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_020.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_021.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_022.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_023.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_024.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_025.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA /./5-consensus/bt_026.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_027.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_028.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_029.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_030.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_031.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_032.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_033.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_034.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_035.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_036.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_037.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_038.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_039.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_040.cgi /scratch1/b os_taurus/Assembly/2009_0122_CA/./5-consensus/bt_041.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_042.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_043.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_044.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_045.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_046.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_047.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_048.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_049.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_050.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_051.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_052.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_053.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_054.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-c onsensus/bt_055.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_056.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_057.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_058.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_059.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_060.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_061.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_062.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_063.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_064.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_065.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_066.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_067.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_068.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_069.cgi /scratch1/bos_tau rus/Assembly/2009_0122_CA/./5-consensus/bt_070.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_071.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_072.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_073.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_074.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_075.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_076.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_077.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_078.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_079.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_080.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_081.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_082.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_083.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consens us/bt_084.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_085.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_086.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_087.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_088.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_089.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_090.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_091.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_092.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_093.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_094.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_095.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_096.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_097.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_098.cgi /scratch1/bos_taurus/As sembly/2009_0122_CA/./5-consensus/bt_099.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_100.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_101.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_102.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_103.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_104.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_105.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_106.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_107.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_108.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_109.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_110.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_111.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_112.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_ 113.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_114.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_115.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_116.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_117.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_118.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_119.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_120.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_121.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_122.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_123.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_124.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_125.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_126.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_127.cgi > /scratch1/bos_taurus/Assem bly/2009_0122_CA/./7-2-CGW/cgw.out 2>&1 ----------------------------------------END Sat Jan 31 01:43:46 2009 (31851 seconds) Found 40115 scaffolds in 7-3-ECR checkpoint number 23. ----------------------------------------START Sat Jan 31 01:44:38 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 23 -c bt -b 00000 -e 5015 -i 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-3-ECR/extendClearRanges-scaffold.00000.err 2>&1 ----------------------------------------END Sat Jan 31 01:56:09 2009 (691 seconds) ----------------------------------------START Sat Jan 31 01:56:09 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 24 -c bt -b 05015 -e 10030 -i 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-3-ECR/extendClearRanges-scaffold.05015.err 2>&1 ----------------------------------------END Sat Jan 31 02:06:50 2009 (641 seconds) ----------------------------------------START Sat Jan 31 02:06:50 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 25 -c bt -b 10030 -e 15045 -i 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-3-ECR/extendClearRanges-scaffold.10030.err 2>&1 ----------------------------------------END Sat Jan 31 02:23:19 2009 (989 seconds) ----------------------------------------START Sat Jan 31 02:23:19 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 26 -c bt -b 15045 -e 20060 -i 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-3-ECR/extendClearRanges-scaffold.15045.err 2>&1 ----------------------------------------END Sat Jan 31 02:37:39 2009 (860 seconds) ----------------------------------------START Sat Jan 31 02:37:39 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 27 -c bt -b 20060 -e 25075 -i 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-3-ECR/extendClearRanges-scaffold.20060.err 2>&1 ----------------------------------------END Sat Jan 31 02:54:31 2009 (1012 seconds) ----------------------------------------START Sat Jan 31 02:54:31 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 28 -c bt -b 25075 -e 30090 -i 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-3-ECR/extendClearRanges-scaffold.25075.err 2>&1 ----------------------------------------END Sat Jan 31 03:08:17 2009 (826 seconds) ----------------------------------------START Sat Jan 31 03:08:17 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 29 -c bt -b 30090 -e 35105 -i 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-3-ECR/extendClearRanges-scaffold.30090.err 2>&1 ----------------------------------------END Sat Jan 31 03:53:35 2009 (2718 seconds) ----------------------------------------START Sat Jan 31 03:53:35 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/extendClearRanges -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -n 30 -c bt -b 35105 -e 40115 -i 2 > /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-3-ECR/extendClearRanges-scaffold.35105.err 2>&1 ----------------------------------------END Sat Jan 31 07:21:26 2009 (12471 seconds) ----------------------------------------START Sat Jan 31 07:21:26 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/cgw -y -R 31 -N 3 -j 1 -k 5 -r 5 -s 2 -z -m 1000 -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-4-CGW/bt /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_001.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_002.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_003.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_004.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_005.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_006.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_007.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_008.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_009.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_010.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_011.cgi /scratch1/bos_t aurus/Assembly/2009_0122_CA/./5-consensus/bt_012.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_013.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_014.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_015.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_016.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_017.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_018.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_019.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_020.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_021.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_022.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_023.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_024.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_025.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-conse nsus/bt_026.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_027.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_028.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_029.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_030.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_031.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_032.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_033.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_034.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_035.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_036.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_037.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_038.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_039.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_040.cgi /scratch1/bos_taurus/ Assembly/2009_0122_CA/./5-consensus/bt_041.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_042.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_043.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_044.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_045.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_046.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_047.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_048.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_049.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_050.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_051.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_052.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_053.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_054.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/b t_055.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_056.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_057.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_058.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_059.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_060.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_061.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_062.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_063.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_064.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_065.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_066.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_067.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_068.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_069.cgi /scratch1/bos_taurus/Assemb ly/2009_0122_CA/./5-consensus/bt_070.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_071.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_072.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_073.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_074.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_075.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_076.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_077.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_078.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_079.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_080.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_081.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_082.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_083.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_084. cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_085.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_086.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_087.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_088.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_089.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_090.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_091.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_092.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_093.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_094.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_095.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_096.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_097.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_098.cgi /scratch1/bos_taurus/Assembly/200 9_0122_CA/./5-consensus/bt_099.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_100.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_101.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_102.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_103.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_104.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_105.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_106.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_107.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_108.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_109.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_110.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_111.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_112.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_113.cgi /s cratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_114.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_115.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_116.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_117.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_118.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_119.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_120.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_121.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_122.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_123.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_124.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_125.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_126.cgi /scratch1/bos_taurus/Assembly/2009_0122_CA/./5-consensus/bt_127.cgi > /scratch1/bos_taurus/Assembly/2009_0 122_CA/./7-4-CGW/cgw.out 2>&1 ----------------------------------------END Sun Feb 1 01:33:19 2009 (65513 seconds) ----------------------------------------START Sun Feb 1 01:33:20 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/PartitionSDB -all -seqstore /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-CGW/bt.SeqStore -version 44 -fragsper 276162 -input /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-CGW/bt.cgw_contigs > /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/partitionSDB.err 2>&1 ----------------------------------------END Sun Feb 1 04:33:00 2009 (10780 seconds) ----------------------------------------START Sun Feb 1 04:33:00 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper -P /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/FragPartition.txt /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore > /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/bt.partitioned.err 2>&1 ----------------------------------------END Sun Feb 1 08:56:11 2009 (15791 seconds) ----------------------------------------START CONCURRENT Sun Feb 1 08:56:11 2009 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 1 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 2 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 3 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 4 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 5 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 6 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 7 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 8 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 9 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 10 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 11 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 12 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 13 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 14 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 15 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 16 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 17 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 18 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 19 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 20 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 21 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 22 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 23 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 24 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 25 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 26 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 27 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 28 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 29 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 30 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 31 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 32 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 33 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 34 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 35 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 36 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 37 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 38 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 39 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 40 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 41 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 42 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 43 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 44 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 45 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 46 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 47 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 48 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 49 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 50 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 51 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 52 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 53 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 54 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 55 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 56 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 57 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 58 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 59 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 60 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 61 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 62 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 63 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 64 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 65 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 66 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 67 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 68 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 69 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 70 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 71 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 72 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 73 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 74 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 75 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 76 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 77 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 78 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 79 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 80 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 81 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 82 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 83 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 84 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 85 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 86 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 87 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 88 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 89 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 90 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 91 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 92 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 93 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 94 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 95 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 96 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 97 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 98 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 99 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 100 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 101 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 102 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 103 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 104 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 105 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 106 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 107 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 108 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 109 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 110 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 111 > /dev/null 2>&1 sh /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/consensus.sh 112 > /dev/null 2>&1 ----------------------------------------END CONCURRENT Sun Feb 1 11:07:06 2009 (7855 seconds) /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/bt.cns_contigs.53 failed. /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/bt.cns_contigs.56 failed. step PostScaffolderConsensus failed with '2 consensusAfterScaffolder jobs failed. Good luck.' Return-Path: Received: from murder ([unix socket]) by cyrus.umiacs.umd.edu (Cyrus v2.2.12-Invoca-RPM-2.2.12-9.RHEL4) with LMTPA; Mon, 02 Feb 2009 11:44:31 -0500 X-Sieve: CMU Sieve 2.2 Received: from pompom.umiacs.umd.edu (pompom.umiacs.umd.edu [128.8.120.254]) by cyrus.umiacs.umd.edu (Postfix) with ESMTP id B4CB21250E0 for ; Mon, 2 Feb 2009 11:44:31 -0500 (EST) X-ASG-Debug-ID: 1233593070-4af0002f0000-ElZl9W X-Barracuda-URL: http://pompom.umiacs.umd.edu:8000/cgi-bin/mark.cgi Received: from mrouter1.umiacs.umd.edu (localhost [127.0.0.1]) by pompom.umiacs.umd.edu (Spam Firewall) with ESMTP id AF8118FF281 for ; Mon, 2 Feb 2009 11:44:30 -0500 (EST) Received: from mrouter1.umiacs.umd.edu (mrouter1.umiacs.umd.edu [128.8.120.6]) by pompom.umiacs.umd.edu with ESMTP id t7enRn0X5GBgkfFv for ; Mon, 02 Feb 2009 11:44:30 -0500 (EST) X-Barracuda-RBL-Trusted-Forwarder: 128.8.120.6 Received: from walnut.umiacs.umd.edu (walnut.umiacs.umd.edu [128.8.119.153]) by mrouter1.umiacs.umd.edu (Postfix) with ESMTP id 7ECAF24C183 for ; Mon, 2 Feb 2009 11:44:30 -0500 (EST) Received: by walnut.umiacs.umd.edu (Postfix, from userid 11333) id 708741D717C; Mon, 2 Feb 2009 11:44:30 -0500 (EST) X-ASG-Orig-Subj: Output from your job 98 Subject: Output from your job 98 To: dpuiu@umiacs.umd.edu Message-Id: <20090202164430.708741D717C@walnut.umiacs.umd.edu> Date: Mon, 2 Feb 2009 11:44:30 -0500 (EST) From: dpuiu@umiacs.umd.edu (Daniela Puiu) X-Barracuda-Connect: mrouter1.umiacs.umd.edu[128.8.120.6] X-Barracuda-Start-Time: 1233593070 X-Barracuda-Virus-Scanned: by UMIACS Barracuda at umiacs.umd.edu X-Barracuda-Spam-Score: 0.00 X-Barracuda-Spam-Status: No, SCORE=0.00 using per-user scores of TAG_LEVEL=3.5 QUARANTINE_LEVEL=1000.0 KILL_LEVEL=9.0 tests= X-Barracuda-Spam-Report: Code version 3.2, rules version 3.2.1.16820 Rule breakdown below pts rule name description ---- ---------------------- -------------------------------------------------- cgwDistanceSampleSize = 1000 cnsConcurrency = 15 cnsMinFrags = 200000 doOverlapTrimming = 1 frgCorrBatchSize = 100000 frgCorrConcurrency = 15 merylMemory = 24000 merylThreads = 15 obtMerThreshold = 200 obtOverlapper = ovl ovlConcurrency = 8 ovlCorrBatchSize = 100000 ovlCorrConcurrency = 15 ovlHashBlockSize = 1200000 ovlMemory = 8GB --hashload 0.8 --hashstrings 400000 ovlMerThreshold = 500 ovlOverlapper = ovl ovlRefBlockSize = 7200000 ovlThreads = 2 unitigger = utg useGrid = 0 utgErrorRate = 0.015 vectorIntersect = bos_taurus.clv /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/gatekeeper: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------START Mon Feb 2 08:06:05 2009 cat /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-CGW/bt.cgw /scratch1/bos_taurus/Assembly/2009_0122_CA/./8-consensus/bt.cns_contigs.*[0-9] /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-CGW/bt.cgw_scaffolds | /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/terminator -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -o /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt > /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/terminator.err 2>&1 ----------------------------------------END Mon Feb 2 08:21:10 2009 (905 seconds) ----------------------------------------START Mon Feb 2 08:21:10 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/asmOutputFasta -p /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.asm /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/asmOutputFasta: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/asmOutputFasta: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/asmOutputFasta: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 All output successfully written. ----------------------------------------END Mon Feb 2 08:45:09 2009 (1439 seconds) ----------------------------------------START Mon Feb 2 08:45:09 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/dumpSingletons -g /scratch1/bos_taurus/Assembly/2009_0122_CA/./bt.gkpStore -c /scratch1/bos_taurus/Assembly/2009_0122_CA/./7-CGW/bt -n 44 -S > /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.singleton.fasta 2> /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/dumpSingletons.err ----------------------------------------END Mon Feb 2 09:01:55 2009 (1006 seconds) ----------------------------------------START Mon Feb 2 09:01:55 2009 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/buildPosMap -o bt < /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.asm /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/buildPosMap: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/buildPosMap: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/buildPosMap: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------END Mon Feb 2 09:20:26 2009 (1111 seconds) ----------------------------------------START Mon Feb 2 09:20:26 2009 sort -k2n -T /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf > /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf.sorted &&/fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth -min 0 -max 3000 < /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf.sorted > /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf.histogram1 && /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth -min 3001 -max 10000 < /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf.sorted > /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf.histogram2 && /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth -min 10001 -max 1000000 < /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf.sorted > /scratch1/bos_taurus/Assembly/2009_0122_ CA/./9-terminator/bt.posmap.frgscf.histogram3 && /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth -min 1000001 < /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf.sorted > /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.posmap.frgscf.histogram4 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_OVL_ERROR_RATE set to 0.06 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_CGW_ERROR_RATE set to 0.10 /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/fragmentDepth: AS_configure()-- AS_CNS_ERROR_RATE set to 0.06 ----------------------------------------END Mon Feb 2 09:29:07 2009 (521 seconds) ----------------------------------------START Mon Feb 2 09:29:07 2009 /usr/bin/env perl /fs/szdevel/dpuiu/SourceForge/wgs-5.2/Linux-amd64/bin/caqc.pl -euid /scratch1/bos_taurus/Assembly/2009_0122_CA/./9-terminator/bt.asm [Scaffolds] TotalScaffolds 66141 TotalContigsInScaffolds 120461 MeanContigsPerScaffold 1.82 MinContigsPerScaffold 1 MaxContigsPerScaffold 457 TotalBasesInScaffolds 2702609713 MeanBasesInScaffolds 40861 MinBasesInScaffolds 432 MaxBasesInScaffolds 26048998 N25ScaffoldBases 7892915 N50ScaffoldBases 4340953 N75ScaffoldBases 1925651 ScaffoldAt1000000000 6115710 ScaffoldAt2000000000 2037084 TotalSpanOfScaffolds 2822470272 MeanSpanOfScaffolds 42674 MinScaffoldSpan 432 MaxScaffoldSpan 26554268 IntraScaffoldGaps 54320 2KbScaffolds 12057 2KbScaffoldSpan 2751036688 MeanSequenceGapLength 2207 [Top5Scaffolds=contigs,size,span,avgContig,avgGap,EUID] 0=457,26048998,26554268,57000,1108,7180001894108 1=407,21750714,21944974,53442,478,7180001893981 2=355,21066634,21546874,59343,1357,7180001894027 3=297,17242334,17864991,58055,2104,7180001894073 4=330,17088677,17407470,51784,969,7180001894079 total=1846,103197357,105318577,55903,1152 [Contigs] TotalContigsInScaffolds 120461 TotalBasesInScaffolds 2702609713 TotalVarRecords 2506487 MeanContigLength 22436 MinContigLength 65 MaxContigLength 627911 N25ContigBases 149660 N50ContigBases 85030 N75ContigBases 41862 ContigAt1000000000 113260 ContigAt2000000000 43342 [BigContigs_greater_10000] TotalBigContigs 42352 BigContigLength 2536133665 MeanBigContigLength 59882 MinBigContig 10000 MaxBigContig 627911 BigContigsPercentBases 93.84 [SmallContigs] TotalSmallContigs 78109 SmallContigLength 166476048 MeanSmallContigLength 2131 MinSmallContig 65 MaxSmallContig 9999 SmallContigsPercentBases 6.16 [DegenContigs] TotalDegenContigs 269031 DegenContigLength 270824509 MeanDegenContigLength 1007 MinDegenContig 65 MaxDegenContig 33824 DegenPercentBases 10.02 [Top5Contigs=reads,bases,EUID] 0=18122,627911,7180001526275 1=6725,606674,7180001526084 2=5933,604149,7180001861759 3=7082,594326,7180001861978 4=10466,592012,7180001528491 total=48328,3025072 [UniqueUnitigs] TotalUUnitigs 1125858 MinUUnitigLength 64 MaxUUnitigLength 161926 MeanUUnitigLength 2937 SDUUnitigLength 5873 [Surrogates] TotalSurrogates 92943 SurrogateInstances 97109 SurrogateLength 113174176 SurrogateInstanceLength 123235054 UnPlacedSurrReadLen 291995468 PlacedSurrReadLen 184492030 MinSurrogateLength 66 MaxSurrogateLength 73289 MeanSurrogateLength 1218 SDSurrogateLength 876 [Mates] ReadsWithNoMate 8711921(24.94%) ReadsWithGoodMate 20676328(59.20%) ReadsWithBadShortMate 276928(0.79%) ReadsWithBadLongMate 46392(0.13%) ReadsWithSameOrientMate 44902(0.13%) ReadsWithOuttieMate 17502(0.05%) ReadsWithBothChaffMate 2320274(6.64%) ReadsWithChaffMate 1391964(3.99%) ReadsWithBothDegenMate 436396(1.25%) ReadsWithDegenMate 236464(0.68%) ReadsWithBothSurrMate 1178(0.00%) ReadsWithSurrogateMate 466302(1.34%) ReadsWithDiffScafMate 300846(0.86%) ReadsWithUnassignedMate 0(0.00%) TotalScaffoldLinks 711 MeanScaffoldLinkWeight 12.91 [Reads] TotalReadsInput NA TotalUsableReads 34927397 AvgClearRange 800 ContigReads 29778572(85.26%) BigContigReads 28872361(82.66%) SmallContigReads 906211(2.59%) DegenContigReads 1074367(3.08%) SurrogateReads 574657(1.65%) PlacedSurrogateReads 221322(0.63%) SingletonReads 3721123(10.65%) ChaffReads 3721105(10.65%) [Coverage] ContigsOnly 8.88 Contigs_Surrogates 8.99 Contigs_Degens_Surrogates 8.48 AllReads 10.34 [TotalBaseCounts] BasesCount NA ClearRangeLengthFRG NA ClearRangeLengthASM 27943626590 SurrogateBaseLength 476487498 ContigBaseLength 24010874849 DegenBaseLength 909505020 SingletonBaseLength 2731251253 Contig_SurrBaseLength 24302870317 [gcContent] Content 41.54 ----------------------------------------END Mon Feb 2 11:40:20 2009 (7873 seconds) The Cleaner has arrived. Doing 'none'.