https://wiki.umiacs.umd.edu/cbcb/index.php?action=history&feed=atom&title=Bm.qc_combine 2026-04-13T03:45:17Z Revision history for this page on the wiki MediaWiki 1.43.7 https://wiki.umiacs.umd.edu/cbcb/index.php?title=Bm.qc_combine&diff=6813&oldid=prev 2010-03-01T16:08:20Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:08, 1 March 2010</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l87">Line 87:</td> <td colspan="2" class="diff-lineno">Line 87:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [Surrogates]             </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [Surrogates]             </div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MinSurrogateSize                    140            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MaxSurrogateSize                  67942            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MeanSurrogateSize                2063.44            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  SDSurrogateSize                  3010.32            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalSurrogates                      NA            20          5856          6785</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalSurrogates                      NA            20          5856          6785</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   SurrogateInstances                    NA            20          7225          8483</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   SurrogateInstances                    NA            20          7225          8483</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l96">Line 96:</td> <td colspan="2" class="diff-lineno">Line 92:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   SurrogateInstanceLength              NA          8388      25015803      15522342</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   SurrogateInstanceLength              NA          8388      25015803      15522342</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   UnPlacedSurrReadLen                  NA          81891      239498624      120812859</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   UnPlacedSurrReadLen                  NA          81891      239498624      120812859</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   PlacedSurrReadLen                    NA          1170      37248682      33034388</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   PlacedSurrReadLen                    NA          1170      37248682      33034388  </div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MinSurrogateLength <del style="font-weight: bold; text-decoration: none;">                  NA </del>            96            161            65</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MinSurrogateLength <ins style="font-weight: bold; text-decoration: none;">                  140 </ins>            96            161            65</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MaxSurrogateLength <del style="font-weight: bold; text-decoration: none;">                  NA </del>          1285          90056          58392</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MaxSurrogateLength <ins style="font-weight: bold; text-decoration: none;">                67942 </ins>          1285          90056          58392</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MeanSurrogateLength <del style="font-weight: bold; text-decoration: none;">                  NA </del>          424          2936          1457</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MeanSurrogateLength <ins style="font-weight: bold; text-decoration: none;">                2063 </ins>          424          2936          1457</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   SDSurrogateLength <del style="font-weight: bold; text-decoration: none;">                    NA </del>          262          6189          2509</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   SDSurrogateLength <ins style="font-weight: bold; text-decoration: none;">                  3010 </ins>          262          6189          2509</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [Mates]                   </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [Mates]                   </div></td></tr> </table>

Dpuiu https://wiki.umiacs.umd.edu/cbcb/index.php?title=Bm.qc_combine&diff=6804&oldid=prev 2010-02-26T18:46:19Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:46, 26 February 2010</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l28">Line 28:</td> <td colspan="2" class="diff-lineno">Line 28:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N25ScaffoldBases                      NA          1753        129247        472523</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N25ScaffoldBases                      NA          1753        129247        472523</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N75ScaffoldBases                      NA          1109          14222          18959</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N75ScaffoldBases                      NA          1109          14222          18959</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  ScaffoldAt1000000                    NA          1285            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   2KbScaffolds                          NA            131          3701          3193</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   2KbScaffolds                          NA            131          3701          3193</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   2KbScaffoldSpan                      NA        663003      78716002      84858641</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   2KbScaffoldSpan                      NA        663003      78716002      84858641</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l44">Line 44:</td> <td colspan="2" class="diff-lineno">Line 43:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalContigsInScaffolds            11714          1513          12659          13607</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalContigsInScaffolds            11714          1513          12659          13607</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalBasesInScaffolds          70676234        1980831      82012118      84309668</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalBasesInScaffolds          70676234        1980831      82012118      84309668</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MeanContigSize                  6033.48            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MinContigSize                        206            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MaxContigSize                    611010            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N50ContigBases                    25236          1257          27474          30726</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N50ContigBases                    25236          1257          27474          30726</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalVarRecords                      NA          1953          86085        145646</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalVarRecords                      NA          1953          86085        145646</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MeanContigLength <del style="font-weight: bold; text-decoration: none;">                    NA </del>          1309          6479          6196</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MeanContigLength <ins style="font-weight: bold; text-decoration: none;">                  6033 </ins>          1309          6479          6196</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MinContigLength <del style="font-weight: bold; text-decoration: none;">                      NA </del>          280            274            66</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MinContigLength <ins style="font-weight: bold; text-decoration: none;">                    206 </ins>          280            274            66</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MaxContigLength <del style="font-weight: bold; text-decoration: none;">                      NA </del>          4952        565900        522243</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MaxContigLength <ins style="font-weight: bold; text-decoration: none;">                  611010 </ins>          4952        565900        522243</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N25ContigBases                        NA          1527          65357        101916</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N25ContigBases                        NA          1527          65357        101916</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">  N50ContigBases                    25236          1257          27474          30726</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N75ContigBases                        NA          1097          6100          5654</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N75ContigBases                        NA          1097          6100          5654</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l58">Line 58:</td> <td colspan="2" class="diff-lineno">Line 55:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalBigContigs                    1208              0          1609          1417</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalBigContigs                    1208              0          1609          1417</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   BigContigLength                46649303              0      57310605      58560900</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   BigContigLength                46649303              0      57310605      58560900</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MeanBigContigSize              38616.97            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MinBigContig                      10018              0          10014          10024</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MinBigContig                      10018              0          10014          10024</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MaxBigContig                      611010              0        565900        522243</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MaxBigContig                      611010              0        565900        522243</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   BigContigsPercentBases            66.00          0.00          69.88          69.46</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   BigContigsPercentBases            66.00          0.00          69.88          69.46</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MeanBigContigLength <del style="font-weight: bold; text-decoration: none;">                  NA </del>            0          35619          41327</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MeanBigContigLength <ins style="font-weight: bold; text-decoration: none;">              38616 </ins>            0          35619          41327</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [SmallContigs]           </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [SmallContigs]           </div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l76">Line 76:</td> <td colspan="2" class="diff-lineno">Line 72:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalDegenContigs                  18868        192840          8497        114780</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalDegenContigs                  18868        192840          8497        114780</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   DegenContigLength              17526009      56098824      10297846      42193843</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   DegenContigLength              17526009      56098824      10297846      42193843</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MeanDegenContigSize              928.87            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MinDegenContig                        71            63            65            63</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MinDegenContig                        71            63            65            63</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MaxDegenContig                    54918          5688          82776          25405</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MaxDegenContig                    54918          5688          82776          25405</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   DegenPercentBases                  24.80        2832.09          12.56          50.05</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   DegenPercentBases                  24.80        2832.09          12.56          50.05</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   DegenVarRecords                      NA          66751          10425          57124</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   DegenVarRecords                      NA          66751          10425          57124</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MeanDegenContigLength <del style="font-weight: bold; text-decoration: none;">                NA </del>          291          1212            368</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MeanDegenContigLength <ins style="font-weight: bold; text-decoration: none;">              928 </ins>          291          1212            368</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>    </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [Top5Contigs=reads,bases,EUID]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [Top5Contigs=reads,bases,EUID]</div></td></tr> </table>

Dpuiu https://wiki.umiacs.umd.edu/cbcb/index.php?title=Bm.qc_combine&diff=6803&oldid=prev 2010-02-26T15:59:22Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:59, 26 February 2010</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l26">Line 26:</td> <td colspan="2" class="diff-lineno">Line 26:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MaxScaffoldSpan                  6532311          23313        2323624        1788901</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   MaxScaffoldSpan                  6532311          23313        2323624        1788901</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   IntraScaffoldGaps                  3478            107          2511          3353</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   IntraScaffoldGaps                  3478            107          2511          3353</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">  MeanSequenceGapSize              1961.04            NA            NA            NA</del></div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N25ScaffoldBases                      NA          1753        129247        472523</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N25ScaffoldBases                      NA          1753        129247        472523</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N75ScaffoldBases                      NA          1109          14222          18959</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   N75ScaffoldBases                      NA          1109          14222          18959</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l32">Line 32:</td> <td colspan="2" class="diff-lineno">Line 31:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   2KbScaffolds                          NA            131          3701          3193</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   2KbScaffolds                          NA            131          3701          3193</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   2KbScaffoldSpan                      NA        663003      78716002      84858641</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   2KbScaffoldSpan                      NA        663003      78716002      84858641</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   MeanSequenceGapLength <del style="font-weight: bold; text-decoration: none;">                NA </del>          2295          2167          2926</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   MeanSequenceGapLength <ins style="font-weight: bold; text-decoration: none;">              1961 </ins>          2295          2167          2926</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>      </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>      </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [Top5Scaffolds=contigs,size,span,avgContig,avgGap]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   [Top5Scaffolds=contigs,size,span,avgContig,avgGap]</div></td></tr> </table>

Dpuiu https://wiki.umiacs.umd.edu/cbcb/index.php?title=Bm.qc_combine&diff=6802&oldid=prev 2010-02-26T15:57:16Z

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Dpuiu https://wiki.umiacs.umd.edu/cbcb/index.php?title=Bm.qc_combine&diff=6801&oldid=prev 2010-02-25T21:03:14Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 21:03, 25 February 2010</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l115">Line 115:</td> <td colspan="2" class="diff-lineno">Line 115:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalReadsInput                  3297077        1178192        4475269</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalReadsInput                  3297077        1178192        4475269</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalUsableReads                2618840        1173341        3849841</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   TotalUsableReads                2618840        1173341        3849841</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">  TotalUnusableReads                678237          4851        625428</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"> </ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   AvgClearRange                        235            791            410</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   AvgClearRange                        235            791            410</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   ContigReads                47342(1.81%) 678087(57.79%)1657932(43.06%)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   ContigReads                47342(1.81%) 678087(57.79%)1657932(43.06%)</div></td></tr> </table>

Dpuiu https://wiki.umiacs.umd.edu/cbcb/index.php?title=Bm.qc_combine&diff=6769&oldid=prev 2010-02-24T18:58:08Z

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Dpuiu https://wiki.umiacs.umd.edu/cbcb/index.php?title=Bm.qc_combine&diff=6768&oldid=prev 2010-02-24T18:56:09Z

<p></p> <p><b>New page</b></p><div>&lt;nowiki&gt; 454 sanger hybrid<br /> [Scaffolds] <br /> TotalScaffolds 1406 10148 10254<br /> TotalContigsInScaffolds 1513 12659 13607<br /> MeanContigsPerScaffold 1.08 1.25 1.33<br /> MinContigsPerScaffold 1 1 1<br /> MaxContigsPerScaffold 5 40 48<br /> TotalBasesInScaffolds 1980831 82012118 84309668<br /> MeanBasesInScaffolds 1409 8082 8222<br /> MinBasesInScaffolds 585 904 283<br /> MaxBasesInScaffolds 7572 2307981 1721555<br /> N25ScaffoldBases 1753 129247 472523<br /> N50ScaffoldBases 1289 46197 117198<br /> N75ScaffoldBases 1109 14222 18959<br /> ScaffoldAt1000000 1285 NA NA<br /> TotalSpanOfScaffolds 2226417 87454189 94122201<br /> MeanSpanOfScaffolds 1584 8618 9179<br /> MinScaffoldSpan 585 904 283<br /> MaxScaffoldSpan 23313 2323624 1788901<br /> IntraScaffoldGaps 107 2511 3353<br /> 2KbScaffolds 131 3701 3193<br /> 2KbScaffoldSpan 663003 78716002 84858641<br /> MeanSequenceGapLength 2295 2167 2926<br /> <br /> [Top5Scaffolds=contigs,size,span,avgContig,avgGap,EUID]<br /> 0 4,7572,7789,1893,72,7180000390137 40,2307981,2323624,57700,401,1328704 48,1721555,1788901,35866,1433,1555904<br /> 1 5,6479,8696,1296,554,7180000388860 24,1516999,1532321,63208,666,1328701 15,1185197,1203477,79013,1306,1555865<br /> 2 2,6083,6694,3042,611,7180000388747 23,1340524,1356064,58284,706,1328703 11,1108784,1129504,100799,2072,1555857<br /> 3 4,5906,8258,1476,784,7180000388779 15,1140592,1149533,76039,639,1328720 14,1079545,1092527,77110,999,1555669<br /> 4 4,5514,8532,1378,1006,7180000389227 25,1070426,1081655,42817,468,1328702 17,1022143,1026496,60126,272,1555876<br /> total 19,31554,39969,1661,601 127,7376522,7443197,58083,547 105,6117224,6240905,58259,1237<br /> <br /> [Contigs] <br /> TotalContigsInScaffolds 1513 12659 13607<br /> TotalBasesInScaffolds 1980831 82012118 84309668<br /> TotalVarRecords 1953 86085 145646<br /> MeanContigLength 1309 6479 6196<br /> MinContigLength 280 274 66<br /> MaxContigLength 4952 565900 522243<br /> N25ContigBases 1527 65357 101916<br /> N50ContigBases 1257 27474 30726<br /> N75ContigBases 1097 6100 5654<br /> <br /> [BigContigs_greater_10000]<br /> TotalBigContigs 0 1609 1417<br /> BigContigLength 0 57310605 58560900<br /> MeanBigContigLength 0 35619 41327<br /> MinBigContig 0 10014 10024<br /> MaxBigContig 0 565900 522243<br /> BigContigsPercentBases 0.00 69.88 69.46<br /> <br /> [SmallContigs] <br /> TotalSmallContigs 1513 11050 12190<br /> SmallContigLength 1980831 24701513 25748768<br /> MeanSmallContigLength 1309 2235 2112<br /> MinSmallContig 280 274 66<br /> MaxSmallContig 4952 9968 9975<br /> SmallContigsPercentBases 100.00 30.12 30.54<br /> <br /> [DegenContigs] <br /> TotalDegenContigs 192840 8497 114780<br /> DegenContigLength 56098824 10297846 42193843<br /> DegenVarRecords 66751 10425 57124<br /> MeanDegenContigLength 291 1212 368<br /> MinDegenContig 63 65 63<br /> MaxDegenContig 5688 82776 25405<br /> DegenPercentBases 2832.09 12.56 50.05<br /> <br /> [Top5Contigs=reads,bases,EUID]<br /> 0 227,4952,7180000388746 7237,565900,1321798 17214,522243,1546057 <br /> 1 113,4737,7180000388714 4447,351060,1320167 18092,508032,1545415 <br /> 2 327,4094,7180000388717 4699,331465,1321830 8957,400176,1545843 <br /> 3 210,3799,7180000388743 3610,306648,1321845 13159,379926,1546078 <br /> 4 105,3688,7180000388727 4775,301942,1321734 12954,379724,1546244 <br /> total 982,21270 24768,1857015 70376,2190101 <br /> <br /> [UniqueUnitigs] <br /> TotalUUnitigs 1534 26192 36145<br /> MinUUnitigLength 72 64 64<br /> MaxUUnitigLength 4155 307689 132923<br /> MeanUUnitigLength 1301 2774 2515<br /> SDUUnitigLength 394 6807 5214<br /> <br /> [Surrogates] <br /> TotalSurrogates 20 5856 6785<br /> SurrogateInstances 20 7225 8483<br /> SurrogateLength 8484 17192360 9886209<br /> SurrogateInstanceLength 8388 25015803 15522342<br /> UnPlacedSurrReadLen 81891 239498624 120812859<br /> PlacedSurrReadLen 1170 37248682 33034388<br /> MinSurrogateLength 96 161 65<br /> MaxSurrogateLength 1285 90056 58392<br /> MeanSurrogateLength 424 2936 1457<br /> SDSurrogateLength 262 6189 2509<br /> <br /> [Mates] <br /> ReadsWithNoMate 2197998(83.93%) 117707(10.03%)2347967(60.99%)<br /> ReadsWithGoodMate 1044(0.04%) 465244(39.65%) 806560(20.95%)<br /> ReadsWithBadShortMate 158(0.01%) 1760(0.15%) 2092(0.05%)<br /> ReadsWithBadLongMate 8(0.00%) 1036(0.09%) 2488(0.06%)<br /> ReadsWithSameOrientMate 86(0.00%) 910(0.08%) 5592(0.15%)<br /> ReadsWithOuttieMate 72(0.00%) 368(0.03%) 1772(0.05%)<br /> ReadsWithBothChaffMate 27690(1.06%) 53194(4.53%) 48840(1.27%)<br /> ReadsWithChaffMate 100682(3.84%) 36650(3.12%) 104996(2.73%)<br /> ReadsWithBothDegenMate 279388(10.67%) 199770(17.03%) 213034(5.53%)<br /> ReadsWithDegenMate 11342(0.43%) 51246(4.37%) 90260(2.34%)<br /> ReadsWithBothSurrMate 0(0.00%) 416(0.04%) 110(0.00%)<br /> ReadsWithSurrogateMate 24(0.00%) 226444(19.30%) 174634(4.54%)<br /> ReadsWithDiffScafMate 348(0.01%) 18596(1.58%) 51496(1.34%)<br /> ReadsWithUnassignedMate 0(0.00%) 0(0.00%) 0(0.00%)<br /> TotalScaffoldLinks 4 116 387<br /> MeanScaffoldLinkWeight 2.50 3.50 8.70<br /> <br /> [Reads] <br /> TotalReadsInput 3297077 1178192 4475269<br /> TotalUsableReads 2618840 1173341 3849841<br /> AvgClearRange 235 791 410<br /> ContigReads 47342(1.81%) 678087(57.79%)1657932(43.06%)<br /> BigContigReads 0(0.00%) 559113(47.65%)1407760(36.57%)<br /> SmallContigReads 47342(1.81%) 118974(10.14%) 250172(6.50%)<br /> DegenContigReads 1530785(58.45%) 109437(9.33%)1052007(27.33%)<br /> SurrogateReads 376(0.01%) 342175(29.16%) 281402(7.31%)<br /> PlacedSurrogateReads 12(0.00%) 45413(3.87%) 46384(1.20%)<br /> SingletonReads 1040349(39.73%) 89055(7.59%) 904884(23.50%)<br /> ChaffReads 1039561(39.70%) 89048(7.59%) 904272(23.49%)<br /> <br /> [Coverage] <br /> ContigsOnly 5.46 6.62 10.91<br /> Contigs_Surrogates 5.50 9.54 12.35<br /> Contigs_Degens_Surrogates 6.20 9.41 10.46<br /> AllReads 310.18 11.32 18.73<br /> <br /> [TotalBaseCounts] <br /> BasesCount NA NA NA<br /> ClearRangeLengthFRG NA NA NA<br /> ClearRangeLengthASM 614416134 927974911 1579010968<br /> SurrogateBaseLength 83061 276747306 153847247<br /> ContigBaseLength 10821164 542975021 920163174<br /> DegenBaseLength 349180617 86620911 282002680<br /> SingletonBaseLength 254332462 58880355 256032255<br /> Contig_SurrBaseLength 10903055 782473645 1040976033<br /> <br /> [gcContent] <br /> Content 32.70 30.11 29.99<br /> <br /> [Unitig Consensus] <br /> NumColumnsInUnitigs 938983681 476792687 1197917290<br /> NumGapsInUnitigs 2374725 1486629 4486947<br /> NumRunsOfGapsInUnitigReads 37987307 20659878 90359012<br /> <br /> [Contig Consensus] <br /> NumColumnsInUnitigs 58875009 92725198 127951717<br /> NumGapsInUnitigs 795848 417174 1450876<br /> NumRunsOfGapsInUnitigReads 13186973 4439224 28262805<br /> NumColumnsInContigs 58856256 92705330 127898545<br /> NumGapsInContigs 776491 395785 1395140<br /> NumRunsOfGapsInContigReads 12345375 4187916 26412719<br /> NumAAMismatches 75765 148474 294243<br /> NumVARStringsWithFlankingGaps 8689 23928 42375<br /> &lt;/nowiki&gt;</div>

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