Pop group meeting - Revision history

Langmead: /* 12/1/2008 */

2008-12-08T21:04:25Z

12/1/2008

← Older revision		Revision as of 21:04, 8 December 2008
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	= 12/1/2008 =		= 12/1/2008 =
	# Mohammad Ghodsi [http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0002836 Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing] PLoS ONE		# Mohammad Ghodsi [http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0002836 Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing] PLoS ONE
			# Ben Langmead [http://www.sciencemag.org/cgi/rapidpdf/1162986v1.pdf Real-Time DNA Sequencing from Single Polymerase Molecules], Science

Ghodsi at 20:18, 2 December 2008

2008-12-02T20:18:42Z

← Older revision		Revision as of 20:18, 2 December 2008
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	= 11/24/2008 =		= 11/24/2008 =
	# Ted Gibbons [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060295 Gut Reaction: Pyrosequencing Provides the Poop on Distal Gut Bacteria (summary)] PLoS <br> [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060280 The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing] PLoS <br> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000255 Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing] PLoS Genetics		# Ted Gibbons [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060295 Gut Reaction: Pyrosequencing Provides the Poop on Distal Gut Bacteria (summary)] PLoS <br> [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060280 The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing] PLoS <br> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000255 Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing] PLoS Genetics

			= 12/1/2008 =
			# Mohammad Ghodsi [http://www.plosone.org/article/info:doi%2F10.1371%2Fjournal.pone.0002836 Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing] PLoS ONE

Tgibbons at 00:44, 25 November 2008

2008-11-25T00:44:08Z

← Older revision		Revision as of 00:44, 25 November 2008
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	= 11/24/2008 =		= 11/24/2008 =
	# Ted Gibbons [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060295 Gut Reaction: Pyrosequencing Provides the Poop on Distal Gut Bacteria (summary)] PLoS <br> [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060280 The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing] PLoS <br> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000255 Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing] PLoS		# Ted Gibbons [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060295 Gut Reaction: Pyrosequencing Provides the Poop on Distal Gut Bacteria (summary)] PLoS <br> [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060280 The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing] PLoS <br> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000255 Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing] PLoS Genetics

Tgibbons: /* 10/06/2008 */

2008-11-25T00:42:27Z

10/06/2008

← Older revision		Revision as of 00:42, 25 November 2008
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	# Daniela Puiu [http://bioinformatics.oxfordjournals.org/cgi/content/full/24/20/2395 SeqMap: mapping massive amount of oligonucleotides to the genome] Bioinformatics		# Daniela Puiu [http://bioinformatics.oxfordjournals.org/cgi/content/full/24/20/2395 SeqMap: mapping massive amount of oligonucleotides to the genome] Bioinformatics
	# James Robert White [http://www.pnas.org/content/104/21/8918.full Artificial selection of simulated microbial ecosystems.] PNAS		# James Robert White [http://www.pnas.org/content/104/21/8918.full Artificial selection of simulated microbial ecosystems.] PNAS
	# ~~MohammadReza~~ Ghodsi [http://aem.asm.org/cgi/content/abstract/74/5/1453 Metagenomics: Read Length Matters] Applied Environmental Microbiology		# Mohammad Reza Ghodsi [http://aem.asm.org/cgi/content/abstract/74/5/1453 Metagenomics: Read Length Matters] Applied Environmental Microbiology
	# Sergey Koren [http://www.ploscompbiol.org/article/info:doi%2F10.1371%2Fjournal.pcbi.1000186 Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads] PLoS Computational Biology		# Sergey Koren [http://www.ploscompbiol.org/article/info:doi%2F10.1371%2Fjournal.pcbi.1000186 Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads] PLoS Computational Biology

Tgibbons: /* 09/29/2008 */

2008-11-25T00:41:46Z

09/29/2008

← Older revision		Revision as of 00:41, 25 November 2008
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	# Mohammad Reza Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/16/5180 A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library] (NAR)		# Mohammad Reza Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/16/5180 A comparison of random sequence reads versus 16S rDNA sequences for estimating the biodiversity of a metagenomic library] (NAR)
	# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/390 R/parallel - speeding up bioinformatics analysis with R] (BMC Bioinformatics)		# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/390 R/parallel - speeding up bioinformatics analysis with R] (BMC Bioinformatics)
	# ~~Theodore~~ Gibbons [http://www.ncbi.nlm.nih.gov/pubmed/18711340 High-resolution metagenomics targets specific functional types in complex microbial communities] (Nature Biotechnology) <BR> [http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html Molecular eco-systems biology: towards an understanding of community function] (Systems Microbiology)		# Ted Gibbons [http://www.ncbi.nlm.nih.gov/pubmed/18711340 High-resolution metagenomics targets specific functional types in complex microbial communities] (Nature Biotechnology) <BR> [http://www.nature.com/nrmicro/journal/v6/n9/abs/nrmicro1935.html Molecular eco-systems biology: towards an understanding of community function] (Systems Microbiology)

	= 10/06/2008 =		= 10/06/2008 =

Tgibbons: Added section for meeting on 11/24/2008 and links for my papers this week

2008-11-25T00:40:49Z

Added section for meeting on 11/24/2008 and links for my papers this week

← Older revision		Revision as of 00:40, 25 November 2008
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	# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)		# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)
	# James Robert White [http://www.pnas.org/content/early/2008/08/08/0801925105.abstract?etoc Resistance, resilience, and redundancy in microbial communities] PNAS		# James Robert White [http://www.pnas.org/content/early/2008/08/08/0801925105.abstract?etoc Resistance, resilience, and redundancy in microbial communities] PNAS

			= 11/24/2008 =
			# Ted Gibbons [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060295 Gut Reaction: Pyrosequencing Provides the Poop on Distal Gut Bacteria (summary)] PLoS <br> [http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0060280 The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing] PLoS <br> [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000255 Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing] PLoS

Whitej: /* 11/17/2008 */

2008-11-24T16:59:01Z

11/17/2008

← Older revision		Revision as of 16:59, 24 November 2008
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	# Mohammad Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/18/e120 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers] Nucleic Acids Research		# Mohammad Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/18/e120 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers] Nucleic Acids Research
	# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)		# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)
			# James Robert White [http://www.pnas.org/content/early/2008/08/08/0801925105.abstract?etoc Resistance, resilience, and redundancy in microbial communities] PNAS

Boliu: /* 11/17/2008 */

2008-11-17T22:53:37Z

11/17/2008

← Older revision		Revision as of 22:53, 17 November 2008
Line 50:		Line 50:

	= 11/17/2008 =		= 11/17/2008 =
	# Bo Liu [http://bioinformatics.oxfordjournals.org/cgi/content/short/24/22/2579?rss=1 Phylogenetic distances are encoded in networks of interacting pathways] ~~Bioinformatic~~		# Bo Liu [http://bioinformatics.oxfordjournals.org/cgi/content/short/24/22/2579?rss=1 Phylogenetic distances are encoded in networks of interacting pathways] Bioinformatics
	# Daniela Puiu [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn582 Human genomes as email attachments] Bioinformatics		# Daniela Puiu [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn582 Human genomes as email attachments] Bioinformatics
	# Mohammad Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/18/e120 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers] Nucleic Acids Research		# Mohammad Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/18/e120 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers] Nucleic Acids Research
	# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)		# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)

Boliu: /* 11/17/2008 */

2008-11-17T22:53:17Z

11/17/2008

← Older revision		Revision as of 22:53, 17 November 2008
Line 50:		Line 50:

	= 11/17/2008 =		= 11/17/2008 =
			# Bo Liu [http://bioinformatics.oxfordjournals.org/cgi/content/short/24/22/2579?rss=1 Phylogenetic distances are encoded in networks of interacting pathways] Bioinformatic
	# Daniela Puiu [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn582 Human genomes as email attachments] Bioinformatics		# Daniela Puiu [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn582 Human genomes as email attachments] Bioinformatics
	# Mohammad Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/18/e120 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers] Nucleic Acids Research		# Mohammad Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/18/e120 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers] Nucleic Acids Research
	# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)		# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)

Sergek: /* 11/17/2008 */

2008-11-17T19:58:47Z

11/17/2008

← Older revision		Revision as of 19:58, 17 November 2008
Line 52:		Line 52:
	# Daniela Puiu [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn582 Human genomes as email attachments] Bioinformatics		# Daniela Puiu [http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btn582 Human genomes as email attachments] Bioinformatics
	# Mohammad Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/18/e120 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers] Nucleic Acids Research		# Mohammad Ghodsi [http://nar.oxfordjournals.org/cgi/content/short/36/18/e120 Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers] Nucleic Acids Research
			# Sergey Koren [http://www.biomedcentral.com/1471-2105/9/420/abstract XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data] (BMC Bioinformatics)