https://wiki.umiacs.umd.edu/cbcb/index.php?action=history&feed=atom&title=VisANT 2026-04-12T20:39:57Z Revision history for this page on the wiki MediaWiki 1.43.7 https://wiki.umiacs.umd.edu/cbcb/index.php?title=VisANT&diff=5235&oldid=prev 2009-05-15T19:46:33Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 19:46, 15 May 2009</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">This is just a summary of my notes on VisANT from reading the user manual[http://visant.bu.edu/vmanual/]</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Useful Features ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Useful Features ==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Integration with KEGG plus several other online databases/tools</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Integration with KEGG plus several other online databases/tools</div></td></tr> </table>

Tgibbons https://wiki.umiacs.umd.edu/cbcb/index.php?title=VisANT&diff=5234&oldid=prev 2009-05-15T19:44:43Z

<p>This is just a summary of my notes on VisANT</p> <p><b>New page</b></p><div>== Useful Features ==<br /> * Integration with KEGG plus several other online databases/tools<br /> * Accessibility<br /> ** Web based utility<br /> ** Downloadable for local jobs<br /> ** Hybrid version can save data to local machine while running on BU machines<br /> * Shortest path calculation<br /> ** Sensitive to directionality <br /> * Metanodes<br /> ** Allow for cleaner visualization of large, complex pathways and multi-protein enzyme complexes<br /> ** Allow for multiple instances of proteins/compounds<br /> * Plug in support<br /> * Filter based on methods<br /> ** Add new method (eg. &quot;Metagenomic Analysis&quot;)<br /> ** Unselect all methods then reselect &quot;Metagenomic Analysis&quot; to view only those nodes and edges revealed by metagenomic analysis<br /> * Batch mode for large-scale applications<br /> <br /> == Missing Features ==<br /> * Mapping sequence data to genes<br /> ** Distributed BHR calculation<br /> * Non-metabolic pathways<br /> ** KEGG has yet to release KGML files for the following pathways:<br /> *** Genetic information processing<br /> *** Environmental information processing<br /> *** Cellular processes<br /> *** Human diseases<br /> *** Drug development<br /> * Open source?<br /> ** &quot;Partially funded by NIH&quot; (probably means they&#039;re required to release source)</div>

Tgibbons