Francisella tularensis novicida GA99-3549: Difference between revisions
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Center: Broad | |||
Status: Assembly (15 contigs) | Status: Assembly (15 contigs) | ||
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== Assembly == | == Assembly == | ||
Location | '''Location''' | ||
/fs/szasmg2/Bacteria/F_tularensis_novicida_GA99-3549/ | /fs/szasmg2/Bacteria/F_tularensis_novicida_GA99-3549/ | ||
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lib: G908A1 mean=4878 stdev=187 (more than original value) | lib: G908A1 mean=4878 stdev=187 (more than original value) | ||
=> 9 scaff, 27 contigs, 1,897,966 bp | => 9 scaff, 27 contigs, 1,897,966 bp | ||
'''2007_0722_AMOScmp-OBT''' | |||
Revision as of 19:10, 22 August 2007
Center: Broad
Status: Assembly (15 contigs)
Data
Reference
Name Length %GC NZ_AAYF01000001.1 209539 32.22 NZ_AAYF01000002.1 76779 33.19 NZ_AAYF01000003.1 164378 32.41 NZ_AAYF01000004.1 74132 33.19 NZ_AAYF01000005.1 33067 31.40 NZ_AAYF01000006.1 611109 31.61 NZ_AAYF01000007.1 154477 32.35 NZ_AAYF01000008.1 4000 34.80 NZ_AAYF01000009.1 98856 31.69 NZ_AAYF01000010.1 298792 32.03 NZ_AAYF01000011.1 97501 33.94 NZ_AAYF01000012.1 72078 34.25 NZ_AAYF01000013.1 526 47.53 NZ_AAYF01000014.1 1056 29.26 NZ_AAYF01000015.1 1150 29.48 Total 1897440
Libraries
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT LOCATION WIBR G908 GA99-3549 G908A2 WGS 4,500 450 768 TA WIBR G908 GA99-3549 G908A4 WGS 4,500 450 768 TA WIBR G908 GA99-3549 G908A1 WGS 4,500 450 19,968 TA WIBR G908 GA99-3549 G908A3 WGS 4,500 450 768 TA WIBR G920 GA99-3549 454-413 454 . . 233,823 TA Total 256,095
Assembly
Location
/fs/szasmg2/Bacteria/F_tularensis_novicida_GA99-3549/
2007_0722_WGA
Only WGS reads runCA-OBT.pl => new read clr, new library insert estimates
lib: G908A1 mean=4878 stdev=187 (more than original value) => 9 scaff, 27 contigs, 1,897,966 bp
2007_0722_AMOScmp-OBT