Francisella tularensis novicida GA99-3549

 Center: Broad
 Status: Assembly (15 contigs)

Data

Reference

 Name              Length %GC
 NZ_AAYF01000001.1 209539 32.22
 NZ_AAYF01000002.1 76779  33.19
 NZ_AAYF01000003.1 164378 32.41
 NZ_AAYF01000004.1 74132  33.19
 NZ_AAYF01000005.1 33067  31.40
 NZ_AAYF01000006.1 611109 31.61
 NZ_AAYF01000007.1 154477 32.35
 NZ_AAYF01000008.1 4000   34.80
 NZ_AAYF01000009.1 98856  31.69
 NZ_AAYF01000010.1 298792 32.03
 NZ_AAYF01000011.1 97501  33.94
 NZ_AAYF01000012.1 72078  34.25
 NZ_AAYF01000013.1 526    47.53
 NZ_AAYF01000014.1 1056   29.26
 NZ_AAYF01000015.1 1150   29.48
 Total             1897440

Libraries

 CENTER  PROJECT  STRAIN    LIB     TYPE SIZE  STDEV  COUNT   LOCATION
 WIBR    G908     GA99-3549 G908A2  WGS 4,500  450    768      TA
 WIBR    G908     GA99-3549 G908A4  WGS 4,500  450    768      TA
 WIBR    G908     GA99-3549 G908A1  WGS 4,500  450    19,968   TA
 WIBR    G908     GA99-3549 G908A3  WGS 4,500  450    768      TA
 WIBR    G920     GA99-3549 454-413 454 .      .      233,823  TA
 Total                                                256,095

Assembly

Location

 /fs/szasmg2/Bacteria/F_tularensis_novicida_GA99-3549/

2007_0822_WGA -> best

Only WGS reads
runCA-OBT.pl => new read clr, new library insert estimates 
lib: G908A1 mean=4878 stdev=187 (more than original value)
=> 9 scaff, 27 contigs, 1,897,966 bp

2007_0822_AMOScmp-OBT-454

=> 13 scaff, 15 contigs, 1,895,402 bp