Francisella tularensis tularensis ATCC6223: Difference between revisions
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Center: Baylor | |||
Status: Assembly (88 contigs; 1,757,628 bp; maxLen=133,694 bp; avgLen=19,973 bp) | Status: Assembly (88 contigs; 1,757,628 bp; maxLen=133,694 bp; avgLen=19,973 bp) | ||
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=> 88 scaffolds, 188 contigs, 1,762,423 bp ; maxContigLen=70,372 bp | => 88 scaffolds, 188 contigs, 1,762,423 bp ; maxContigLen=70,372 bp | ||
272,522 singletons ; all 454 paired reads are left as singletons | 272,522 singletons ; all 454 paired reads are left as singletons | ||
'''2007_0821_AMOScmp-454-SchuS4''' | |||
uses Schu S4 as reference | |||
=> 1 scaff, 194 contigs, 1,759,427 bp | |||
'''Problem''' | '''Problem''' | ||
lib 4WG_FTUL.AT_000SA in TA but not in SRA, .sff file is missing; could not run newbler on both 454 libraries | lib 4WG_FTUL.AT_000SA in TA but not in SRA, .sff file is missing; could not run newbler on both 454 libraries | ||
Revision as of 20:12, 23 August 2007
Center: Baylor
Status: Assembly (88 contigs; 1,757,628 bp; maxLen=133,694 bp; avgLen=19,973 bp)
Data
Libraries:
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT LOCATION BCM BFTF ATCC6223 BFTFP WGS 6,250 1,250 2,144 TA BCM 4WG_FTUL.AT ATCC6223 4WG_FTUL.AT_000SA 454 . . 408,780 TA BCM 4WG_FTUL.AT ATCC6223 4WG_FTUL.AT_000pA 454 . . 218,232 SRA ? Total 629,156
Assembly
Locations:
/fs/szasmg2/Bacteria/F_tularensis_tularensis_ATCC6223/
2007_0821_AMOScmp-454 -> best
=> 88 scaffolds, 188 contigs, 1,762,423 bp ; maxContigLen=70,372 bp 272,522 singletons ; all 454 paired reads are left as singletons
2007_0821_AMOScmp-454-SchuS4
uses Schu S4 as reference => 1 scaff, 194 contigs, 1,759,427 bp
Problem
lib 4WG_FTUL.AT_000SA in TA but not in SRA, .sff file is missing; could not run newbler on both 454 libraries