Burkholderia pseudomallei: Difference between revisions

From Cbcb
Jump to navigation Jump to search
No edit summary
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
NCBI  
NCBI  
  [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=Burkholderia%20pseudomallei Genome Projects]
  21 Genome Projects,
  10 TIGR, 10 NMRC, 1 Sanger
  4 complete, 17 draft
Sanger
  [http://www.sanger.ac.uk/Projects/B_pseudomallei/ Strain K96243 Genome Project]
  traces are not available


  [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=Burkholderia%20pseudomallei Genome Projects]
NMRC
  21 Genome Projects, done by TIGR,NMRC,Sanger
   no traces available on their site
   4 complete, 6 draft


GenomeProjects:
NCBI GenomeProjects:
   1C Burkholderia pseudomallei 1106a [TIGR] Complete
   1C Burkholderia pseudomallei 1106a [TIGR] Complete
   2  Burkholderia pseudomallei 1106b [TIGR]
   2  Burkholderia pseudomallei 1106b [TIGR]
Line 12: Line 19:
   5  Burkholderia pseudomallei 1655 [TIGR]
   5  Burkholderia pseudomallei 1655 [TIGR]
   6  Burkholderia pseudomallei 1710a [TIGR]
   6  Burkholderia pseudomallei 1710a [TIGR]
   7C Burkholderia pseudomallei 1710b [TIGR] Complete
   7C Burkholderia pseudomallei 1710b [TIGR] Complete
   8  Burkholderia pseudomallei 305 [TIGR/JGI/LANL]
   8  Burkholderia pseudomallei 305 [TIGR/JGI/LANL]
   9  Burkholderia pseudomallei 381 [NMRC/Naval Medical Research Center]
   9  Burkholderia pseudomallei 381 [NMRC/Naval Medical Research Center]
  10  Burkholderia pseudomallei 406e [TIGR]
  10  Burkholderia pseudomallei 406e [TIGR]
  11C Burkholderia pseudomallei 668 [TIGR] Complete
  11C Burkholderia pseudomallei 668 [TIGR] Complete
  12  Burkholderia pseudomallei 7894 [NMRC/Naval Medical Research Center]
  12  Burkholderia pseudomallei 7894 [NMRC/Naval Medical Research Center]
  13  Burkholderia pseudomallei 9 [NMRC/Naval Medical Research Center]
  13  Burkholderia pseudomallei 9 [NMRC/Naval Medical Research Center]
Line 23: Line 30:
  16  Burkholderia pseudomallei BCC215 [NMRC/Naval Medical Research Center]
  16  Burkholderia pseudomallei BCC215 [NMRC/Naval Medical Research Center]
  17  Burkholderia pseudomallei DM98 [NMRC/Naval Medical Research Center]
  17  Burkholderia pseudomallei DM98 [NMRC/Naval Medical Research Center]
  18C Burkholderia pseudomallei K96243 [Sanger Institute] Complete
  18C Burkholderia pseudomallei K96243 [Sanger Institute] Complete ; seq not available for download
  19  Burkholderia pseudomallei NCTC 13177 [NMRC/Naval Medical Research Center]
  19  Burkholderia pseudomallei NCTC 13177 [NMRC/Naval Medical Research Center]
  20  Burkholderia pseudomallei Pasteur 52237 [TIGR]
  20  Burkholderia pseudomallei Pasteur 52237 [TIGR]
  21  Burkholderia pseudomallei S13 [TIGR]
  21  Burkholderia pseudomallei S13 [TIGR]


    Assembly Name                                          Submit. AssID  TaxID  TotalLength    #Cgts  #Traces Cov
NCBI AA:
    Assembly Name                                          Submit. AssID  TaxID  TotalLength    #Cgts  #Traces Cov
   1C Burkholderia pseudomallei 1106a                        TIGR    2387    357348  7,089,249      2      89,456  9.5X
   1C Burkholderia pseudomallei 1106a                        TIGR    2387    357348  7,089,249      2      89,456  9.5X
   2 Burkholderia pseudomallei 1106b                        JCVI    2958    357347  7,213,434      113    77,893  8.5X
   2 Burkholderia pseudomallei 1106b                        JCVI    2958    357347  7,213,434      113    77,893  8.5X
   5 Burkholderia pseudomallei 1655                          TIGR    657    331109  7,029,727      194    78,195  8.6X
   5 Burkholderia pseudomallei 1655                          TIGR    657    331109  7,029,727      194    78,195  8.6X
   6 Burkholderia pseudomallei 1710a                        JCVI    2959    320371  7,329,077      108    74,180  7.6X
   6 Burkholderia pseudomallei 1710a                        JCVI    2959    320371  7,329,077      108    74,180  7.6X
   7C Burkholderia pseudomallei 1710b                        TIGR    798    320372  7,308,054      2      80,903  8.1X
   7C Burkholderia pseudomallei 1710b                        TIGR    798    320372  7,308,054      2      80,903  8.1X
  10 Burkholderia pseudomallei 406e                          TIGR    719    360118  7,322,716      271    85,904  8.9X
  10 Burkholderia pseudomallei 406e                          TIGR    719    360118  7,322,716      271    85,904  8.9X
  11C Burkholderia pseudomallei 668                          TIGR    2413    320373  7,040,403      2      82,452  9.4X
  11C Burkholderia pseudomallei 668                          TIGR    2413    320373  7,040,403      2      82,452  9.4X
  20 Burkholderia pseudomallei Pasteur                      TIGR    717    331978  7,347,086      217    72,865  7.8X
  20 Burkholderia pseudomallei Pasteur                      TIGR    717    331978  7,347,086      217    72,865  7.8X
  21 Burkholderia pseudomallei S13                          TIGR    751    320374  7,388,856      169    91,531  9.5X
  21 Burkholderia pseudomallei S13                          TIGR    751    320374  7,388,856      169    91,531  9.5X
  ? Burkholderia pseudomallei bacteriophage phi52237        TIGR    1934    331120  37,639          1      1,306  27.2X
 
  ? Burkholderia pseudomallei bacteriophage phi644-2        TIGR    2590    360048  48,674          1      536    9.0X
File locations:
   ? Burkholderia pseudomallei bacteriophage phiE12-2        TIGR    2591    360049  36,690          1      715    15.8X
   /fs/szasmg2/Bacteria/Burkholderia_pseudomallei

Latest revision as of 15:13, 28 November 2007

NCBI 

 Genome Projects
 21 Genome Projects, 
 10 TIGR, 10 NMRC, 1 Sanger
 4 complete, 17 draft

Sanger 

 Strain K96243 Genome Project
 traces are not available

NMRC 

 no traces available on their site

NCBI GenomeProjects: 

 1C Burkholderia pseudomallei 1106a [TIGR] Complete
 2  Burkholderia pseudomallei 1106b [TIGR]
 3  Burkholderia pseudomallei 112 [NMRC/Naval Medical Research Center]
 4  Burkholderia pseudomallei 14 [NMRC/Naval Medical Research Center]
 5  Burkholderia pseudomallei 1655 [TIGR]
 6  Burkholderia pseudomallei 1710a [TIGR]
 7C Burkholderia pseudomallei 1710b [TIGR] Complete
 8  Burkholderia pseudomallei 305 [TIGR/JGI/LANL]
 9  Burkholderia pseudomallei 381 [NMRC/Naval Medical Research Center]
10  Burkholderia pseudomallei 406e [TIGR]
11C Burkholderia pseudomallei 668 [TIGR] Complete
12  Burkholderia pseudomallei 7894 [NMRC/Naval Medical Research Center]
13  Burkholderia pseudomallei 9 [NMRC/Naval Medical Research Center]
14  Burkholderia pseudomallei 91 [NMRC/Naval Medical Research Center]
15  Burkholderia pseudomallei B7210 [NMRC/Naval Medical Research Center]
16  Burkholderia pseudomallei BCC215 [NMRC/Naval Medical Research Center]
17  Burkholderia pseudomallei DM98 [NMRC/Naval Medical Research Center]
18C Burkholderia pseudomallei K96243 [Sanger Institute] Complete ; seq not available for download
19  Burkholderia pseudomallei NCTC 13177 [NMRC/Naval Medical Research Center]
20  Burkholderia pseudomallei Pasteur 52237 [TIGR]
21  Burkholderia pseudomallei S13 [TIGR]

NCBI AA: 

    Assembly Name                                           Submit. AssID   TaxID   TotalLength     #Cgts   #Traces Cov
 1C Burkholderia pseudomallei 1106a                         TIGR    2387    357348  7,089,249       2       89,456  9.5X
 2  Burkholderia pseudomallei 1106b                         JCVI    2958    357347  7,213,434       113     77,893  8.5X
 5  Burkholderia pseudomallei 1655                          TIGR    657     331109  7,029,727       194     78,195  8.6X
 6  Burkholderia pseudomallei 1710a                         JCVI    2959    320371  7,329,077       108     74,180  7.6X
 7C Burkholderia pseudomallei 1710b                         TIGR    798     320372  7,308,054       2       80,903  8.1X
10  Burkholderia pseudomallei 406e                          TIGR    719     360118  7,322,716       271     85,904  8.9X
11C Burkholderia pseudomallei 668                           TIGR    2413    320373  7,040,403       2       82,452  9.4X
20  Burkholderia pseudomallei Pasteur                       TIGR    717     331978  7,347,086       217     72,865  7.8X
21  Burkholderia pseudomallei S13                           TIGR    751     320374  7,388,856       169     91,531  9.5X

File locations: 

 /fs/szasmg2/Bacteria/Burkholderia_pseudomallei
Retrieved from "https://wiki.umiacs.umd.edu/cbcb/index.php?title=Burkholderia_pseudomallei&oldid=2110"