Assembly merge: Difference between revisions

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Line 8: Line 8:
   Solexa data
   Solexa data
   edena & velvet assemblers
   edena & velvet assemblers
Solutions:
  merge 2 assembly sets
  run minimus on them


== Multipls data sets, one(multiple) denovo assemblers ==
== Multipls data sets, one(multiple) denovo assemblers ==

Revision as of 17:47, 27 March 2008

Cases:

No reference assembly

One data set, multiple denovo assemblers

Example:

 Solexa data
 edena & velvet assemblers

Solutions:

 merge 2 assembly sets
 run minimus on them

Multipls data sets, one(multiple) denovo assemblers

Example:

 Solexa & 454 data
 velvet assemblers for each set

One reference assembly

Multiple reference assemblies