Salmonella other

!!! OLD : should be removed

Data

NCBI

 Genome Projects
 26 listed, 5 complete
    1  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701 [TIGR]
    2  Salmonella enterica subsp. enterica serovar Agona str. SL483 [J. Craig Venter Institute]
    3  Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 [Chang Gung Memorial Hospital]          complete
    4  Salmonella enterica subsp. enterica serovar Dublin [University of Illinois at Urbana-Champaign]
    5  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 [TIGR]
    6  Salmonella enterica subsp. enterica serovar Enteritidis str. LK5 [University of Illinois at Urbana-Champaign]
    7  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 [J. Craig Venter Institute]
    8  Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 [TIGR/JCVI/J. Craig Venter Institute]
    9  Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 [J. Craig Venter Institute]
   10  Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191 [J. Craig Venter Institute]
   11  Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 [TIGR]
   12  Salmonella enterica subsp. enterica serovar Newport str. SL254 [TIGR/J. Craig Venter Institute]
   13  Salmonella enterica subsp. enterica serovar Newport str. SL317 [J. Craig Venter Institute]                   in TA but not AA; 63 contigs; shold be submitted to AA!!
   14  Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 [Washington University (WashU)]       complete
   15  Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 [Peking University Health Science Center]
   16  Salmonella enterica subsp. enterica serovar Pullorum [University of Illinois at Urbana-Champaign]
   17  Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 [TIGR]
   18  Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29 [TIGR]
   19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 [TIGR]
   20  Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480 [J. Craig Venter Institute]
   21  Salmonella enterica subsp. enterica serovar Typhi Ty2 [University of Wisconsin-Madison, USA]                 complete
   22  Salmonella enterica subsp. enterica serovar Typhi str. CT18 [Sanger Institute]                               complete
   23  Salmonella typhimurium DT104 [Sanger Institute]
   24  Salmonella typhimurium LT2 [Washington University (WashU)]                                                   complete
   25  Salmonella typhimurium SL1344 [Sanger Institute]
   26  Salmonella typhimurium TR7095 [Washington University (WashU)]
 
 TA:
    1  salmonella_enterica_subsp__enterica_serovar_4__5__12_i___str__cvm23701
    2  salmonella_enterica_subsp__enterica_serovar_agona_str__sl483
    3  salmonella_enterica_subsp__enterica_serovar_dublin_str__ct_02021853
    4  salmonella_enterica_subsp__enterica_serovar_hadar_str__ri_05p066             :  not in Genome Projects/AA (JCVI MSC)
    5  salmonella_enterica_subsp__enterica_serovar_heidelberg_str__sl476
    6  salmonella_enterica_subsp__enterica_serovar_heidelberg_str__sl486
    7  salmonella_enterica_subsp__enterica_serovar_javiana_str__ga_mm04042433
    8  salmonella_enterica_subsp__enterica_serovar_kentucky_str__cdc_191
    9  salmonella_enterica_subsp__enterica_serovar_kentucky_str__cvm29188
   10  salmonella_enterica_subsp__enterica_serovar_newport_str__sl254
   11  salmonella_enterica_subsp__enterica_serovar_newport_str__sl317
   12  salmonella_enterica_subsp__enterica_serovar_saintpaul_str__sara23
   13  salmonella_enterica_subsp__enterica_serovar_saintpaul_str__sara29
   14  salmonella_enterica_subsp__enterica_serovar_schwarzengrund_str__cvm19633
   15  salmonella_enterica_subsp__enterica_serovar_schwarzengrund_str__sl480
   16  salmonella_enterica_subsp__enterica_serovar_virchow_str__sl491               :  not in Genome Projects/AA (JCVI MSC)
   17  salmonella_enterica_subsp__enterica_serovar_weltevreden_str__hi_n05_537      :  not in Genome Projects/AA (JCVI MSC)
 
 AA:
    1  Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701  TIGR    2740    440534  4,895,918       113     53,284  8.0X
    2  Salmonella enterica subsp. enterica serovar Agona str. SL483            JCVI    2924    454166  4,835,750       56      51,307  9.5X
    3  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853     TIGR    2741    439851  4,885,976       142     50,129  7.8X
    4  Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066        JCVI    2995    465516  4,793,325       50      50,470  9.6X
    5  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476       JCVI    2927    454169  5,083,392       49      54,058  9.2X
    6  Salmonella enterica subsp. enterica serovar Heidelberg str. SL486       JCVI    2925    454164  4,728,232       48      53,785  10.1X
    7  Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433  JCVI    2921    454167  4,553,049       74      52,375  9.9X
    8  Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191       JCVI    2922    454231  4,696,566       53      51,826  9.6X
    9  Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188      TIGR    2737    439842  5,000,919       75      55,311  9.1X
   10  Salmonella enterica subsp. enterica serovar Newport str. SL254          JCVI    2926    423368  4,831,246       2       50,473  8.8X
   11  Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23       TIGR    2735    439846  4,785,870       143     50,936  8.6X
   12  Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29       TIGR    2739    439847  4,928,961       182     50,405  7.9X
   13  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  TIGR  2738    439843  4,734,042       160     49,533  7.4X
   14  Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480   JCVI    2923    454165  4,761,576       67      50,418  9.1X
   15  Salmonella enterica subsp. enterica serovar Virchow str. SL491          JCVI    2996    465517  4,858,188       73      54,841  10.3X
   16  Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 JCVI    2994    465518  5,047,463       81      54,390  9.8X

TIGR/JCVI

  MSC

Sanger

 Salmonella comparative sequencing project
 Salmonella ftp
 
 Salmonella paratyphi A project
 Salmonella paratyphi A ftp
 
 Salmonella typhi project
 Salmonella typhi ftp includes 454
 
       Organism                        Size(Mb)  G+C   Status          Funding              Contigs   Traces      Name
    1  Salmonella bongori              4.46    51.3%   Finished        Beowulf Genomics     1         75084       SB
    2  Salmonella enteritidis PT4      4.686   52.17%  Finished        Beowulf Genomics     2         68660       PT4
    3  Salmonella gallinarum 287/91    4.747   52.2%   Finished        Beowulf Genomics     2         80266       SG
    4  Salmonella enterica Hadar       4.786   52.3%   Finished        Wellcome Trust       3         79998       HADAR
    5  Salmonella enterica Infantis    4.711   ~52.3%  Finished        Wellcome Trust       1         98013       SIN
    6  Salmonella paratyphi A          4.582   52.2%   Finished        Wellcome Trust       2         81421       spa
    7  Salmonella typhimurium DT104    5.02    52.1%   Finished        Beowulf Genomics     2         76534       DT104
    8  Salmonella typhimurium D23580   ~5.0    ~52%    Fin/gap clos.   Wellcome Trust       31        88293       D23580
    9  Salmonella typhimurium DT2      ~5      ~52%    Shotgun Progr.  Wellcome Trust       17        23552       DT2
   10  Salmonella typhimurium SL1344   5.067   52.2%   Finished        Beowulf Genomics     4         81802       SL1344
   11  Salmonella typhi                4.81    52.1%   Finished        Beowulf Genomics     1         0           st