Partition: Difference between revisions
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*/fs/szasmg/metagenomics/Partition/MetaPart/src/Partition.py [latest but possibly unstable builds] | */fs/szasmg/metagenomics/Partition/MetaPart/src/Partition.py [latest but possibly unstable builds] | ||
== Options == | == Options == | ||
<pre> | |||
-p Populate the given partition/XML. | -p Populate the given partition/XML. | ||
-b Given the input file, build a partition. | -b Given the input file, build a partition. | ||
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-o Name of the output .part file. | -o Name of the output .part file. | ||
-c Convert an old partition format into the new xml format. | -c Convert an old partition format into the new xml format. | ||
</pre> | |||
Revision as of 14:07, 13 August 2009
Summary
Partition is a python script that takes an input of regular expressions and metadata to build an xml file of matching header information from a fasta-formatted file. Partition.py is located at:
- /fs/szasmg/metagenomics/Partition/Partition.py [latest stable]
- /fs/szasmg/metagenomics/Partition/MetaPart/src/Partition.py [latest but possibly unstable builds]
Options
-p Populate the given partition/XML. -b Given the input file, build a partition. -m Metadata file that will be used to populate the partitions. -h Header information for the metadata, if not present column information for metadata will be found in first line of the metadata. -f Input fasta file. -s Split the fasta file based on the partition information and output to the directory. -o Name of the output .part file. -c Convert an old partition format into the new xml format.