Revision as of 20:44, 15 December 2009

Data

1 complete + 2 draft assembly strains:

complete: NC_009515.1
1,853,160bp
Ref: /fs/szdata/ncbi/ftp.ncbi.nih.gov/genomes/Bacteria/Methanobrevibacter_smithii_ATCC_35061/*fna
Published: Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut PNAS
Assembled: Phrap and PCAP

22 strains
half-way through sequencing (should have all the data by early to mid-January)
right now (--Dpuiu 15:19, 15 December 2009 (EST)):
- 10 strains sequenced by GAII Illumina (36mers) with 3-8 million reads per strain (coverage is 50-150x),
- 12 strains sequenced by 454-Titanium sequencing, with 20,000 to 90,000 reads per strain (coverage is ~5-20x).

@@ Line 5: / Line 5: @@
 == Methanobrevibacter smithii ATCC 35061 ==
-* NC_009515.1
+* complete: NC_009515.1
-* complete ; 1,853,160bp
+* 1,853,160bp
 * Ref:  /fs/szdata/ncbi/ftp.ncbi.nih.gov/genomes/Bacteria/Methanobrevibacter_smithii_ATCC_35061/*fna
 * Published: [http://www.pnas.org/content/104/25/10643.long Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut] PNAS
@@ Line 12: / Line 12: @@
 == Methanobrevibacter smithii DSM 2374 ===
-* project: NZ_ABYV02000000
+* draft: NZ_ABYV02000000
 * 1,727,775 bp
 * 25 contigs: NZ_ABYV02000001 .. NZ_ABYV02000025
 == Methanobrevibacter smithii DSM 2375 ==
-* project: NZ_ABYW00000000
+* draft: NZ_ABYW00000000
 * 1,704,865 bp
 * 24 contigs: NZ_ABYW01000001 .. NZ_ABYW01000024
+== Methanobrevibacter smithii DSM 11975 ==
+* progress
 == WUSTL (Gordon Lab) ==