Methanobrevibacter smithii: Difference between revisions
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1 complete + 2 draft assembly strains: | 1 complete + 2 draft assembly strains: | ||
'''Methanobrevibacter smithii ATCC 35061''' | |||
* complete: NC_009515.1 | * complete: NC_009515.1 | ||
* 1,853,160bp | * 1,853,160bp | ||
| Line 11: | Line 11: | ||
* Assembled: Phrap and PCAP | * Assembled: Phrap and PCAP | ||
'''Methanobrevibacter smithii DSM 2374''' | |||
* draft: NZ_ABYV02000000 | * draft: NZ_ABYV02000000 | ||
* 1,727,775 bp | * 1,727,775 bp | ||
* 25 contigs: NZ_ABYV02000001 .. NZ_ABYV02000025 | * 25 contigs: NZ_ABYV02000001 .. NZ_ABYV02000025 | ||
'''Methanobrevibacter smithii DSM 2375''' | |||
* draft: NZ_ABYW00000000 | * draft: NZ_ABYW00000000 | ||
* 1,704,865 bp | * 1,704,865 bp | ||
* 24 contigs: NZ_ABYW01000001 .. NZ_ABYW01000024 | * 24 contigs: NZ_ABYW01000001 .. NZ_ABYW01000024 | ||
'''Methanobrevibacter smithii DSM 11975 ''' | |||
* progress | * progress | ||
== WUSTL (Gordon Lab) == | == WUSTL (Gordon Lab) == | ||
* http://cgsweb.wustl.edu/~hansene/ | * Ftp: | ||
http://cgsweb.wustl.edu/~hansene/ | |||
* Location: | |||
/fs/szattic-asmg4/methanobrevibacter_smithii/Data | |||
* 22 strains | * 22 strains | ||
* half-way through sequencing (should have all the data by early to mid-January) | * half-way through sequencing (should have all the data by early to mid-January) | ||
Revision as of 19:56, 16 December 2009
Data
NCBI
1 complete + 2 draft assembly strains:
Methanobrevibacter smithii ATCC 35061
- complete: NC_009515.1
- 1,853,160bp
- Ref: /fs/szdata/ncbi/ftp.ncbi.nih.gov/genomes/Bacteria/Methanobrevibacter_smithii_ATCC_35061/*fna
- Published: Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut PNAS
- Assembled: Phrap and PCAP
Methanobrevibacter smithii DSM 2374
- draft: NZ_ABYV02000000
- 1,727,775 bp
- 25 contigs: NZ_ABYV02000001 .. NZ_ABYV02000025
Methanobrevibacter smithii DSM 2375
- draft: NZ_ABYW00000000
- 1,704,865 bp
- 24 contigs: NZ_ABYW01000001 .. NZ_ABYW01000024
Methanobrevibacter smithii DSM 11975
- progress
WUSTL (Gordon Lab)
- Ftp:
http://cgsweb.wustl.edu/~hansene/
- Location:
/fs/szattic-asmg4/methanobrevibacter_smithii/Data
- 22 strains
- half-way through sequencing (should have all the data by early to mid-January)
- right now (--Dpuiu 15:19, 15 December 2009 (EST)):
- 10 strains sequenced by GAII Illumina (36mers) with 3-8 million reads per strain (coverage is 50-150x),
- 12 strains sequenced by 454-Titanium sequencing, with 20,000 to 90,000 reads per strain (coverage is ~5-20x).