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/fs/szattic-asmg4/Bees/Bombus_impatiens | /fs/szattic-asmg4/Bees/Bombus_impatiens | ||
* There are 7 pairs of data files (paired ends) | * There are 7 pairs of data files (paired ends) : lanes 1..3,5..8 (lane 4 wasn't used) | ||
* Tasks | |||
* Tasks to figure out: | |||
1. Erroneous reads/bases, which we need to correct or discard | 1. Erroneous reads/bases, which we need to correct or discard | ||
2. GC bias, so we can compute a-stats properly | 2. GC bias, so we can compute a-stats properly | ||
3. Redundancy in the long paired ends, which are lane 1 and lane 2. | 3. Redundancy in the long paired ends, which are lane 1 and lane 2. | ||
* Lane 1: | |||
3Kbp insert | |||
34,944,099 reads | |||
* Lane 3: | |||
8Kbp insert | |||
32,540,640 reads | |||
Revision as of 15:41, 2 March 2010
Data
- Location:
/fs/szattic-asmg4/Bees/Bombus_impatiens
- There are 7 pairs of data files (paired ends) : lanes 1..3,5..8 (lane 4 wasn't used)
- Tasks to figure out:
1. Erroneous reads/bases, which we need to correct or discard 2. GC bias, so we can compute a-stats properly 3. Redundancy in the long paired ends, which are lane 1 and lane 2.
- Lane 1:
3Kbp insert 34,944,099 reads
- Lane 3:
8Kbp insert 32,540,640 reads