Megachile rotundata: Difference between revisions
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cat trace.count | grep _1_ | sed 's/_sequence.txt//' | perl -ane 'print " ",$F[1],"\t",$F[0]/4,"\t",$F[0]/2,"\n";' | cat trace.count | grep _1_ | sed 's/_sequence.txt//' | perl -ane 'print " ",$F[1],"\t",$F[0]/4,"\t",$F[0]/2,"\n";' | ||
lib insert mates reads | lib insert mates reads readLen | ||
s_2_1_3kbp 3000 21563283 | s_2_1_3kbp 3000 21563283 43,126,566 124 | ||
s_2_1_5kbp 5000 36218589 | s_2_1_5kbp 5000 36218589 72,437,178 35 | ||
s_2_1_8kbp 8000 198377 | s_2_1_8kbp 8000 198377 396,754 35 | ||
s_3_1 475 35548153 | s_3_1 475 35548153 71,096,306 124 | ||
s_4_1 475 35471044 | s_4_1 475 35471044 70,942,088 124 | ||
s_5_1 475 35616846 | s_5_1 475 35616846 71,233,692 124 | ||
s_6_1 475 35303840 | s_6_1 475 35303840 70,607,680 124 | ||
s_7_1 475 34893313 | s_7_1 475 34893313 69,786,626 124 | ||
== Trimmed Traces == | == Trimmed Traces == | ||
Revision as of 14:01, 1 September 2010
Data
Original Traces
cat trace.count | grep _1_ | sed 's/_sequence.txt//' | perl -ane 'print " ",$F[1],"\t",$F[0]/4,"\t",$F[0]/2,"\n";'
lib insert mates reads readLen s_2_1_3kbp 3000 21563283 43,126,566 124 s_2_1_5kbp 5000 36218589 72,437,178 35 s_2_1_8kbp 8000 198377 396,754 35 s_3_1 475 35548153 71,096,306 124 s_4_1 475 35471044 70,942,088 124 s_5_1 475 35616846 71,233,692 124 s_6_1 475 35303840 70,607,680 124 s_7_1 475 34893313 69,786,626 124
Trimmed Traces
Location
/fs/szattic-asmg5/Bees/Megachile_rotundata/error_correction/large_libs/s_?_?_?kb.sequence.cor.all.txt ftp://ftp.cbcb.umd.edu/pub/data/assembly/Megachile_rotundata/reads/s_?_?_?kb.sequence.cor.all.txt.gz
Assemblies
Location
mulberry:/scratch2/dpuiu/Megachile_rotundata