Data formats: Difference between revisions
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= AGP = | |||
= Anc ??? = | |||
* Example: | |||
#ref qry ref_len qry_len ref_start ref_end qry_start qry_end ref_snp qry_snp merge_count qry_dir ref_intercept | |||
1 7180002077591 200994015 85878 19836 20318 78868 79351 58 58 1 1 -0.05 | |||
1 7180002077591 200994015 85878 27827 83785 67617 1127 23332 34016 14 -1 0.09 | |||
1 7180002077394 200994015 6640 84737 93563 6628 30 4229 2614 5 -1 0.09 | |||
= GFF = | |||
* [http://www.sequenceontology.org/gff3.shtml GFF3] | |||
* [http://gmod.org/wiki/GFF3 GFF3] | |||
* [http://genomebiology.com/2010/11/8/R88 GVF] Genome variation format | |||
= Posmap = | = Posmap = | ||
* | * 0-bases | ||
* Example: | * Example: | ||
#qry ref ref_start ref_end qry_dir | #qry ref ref_start ref_end qry_dir | ||
| Line 17: | Line 32: | ||
71525049 71526705 1640 2 192 192 0 | 71525049 71526705 1640 2 192 192 0 | ||
... | ... | ||
Latest revision as of 15:06, 21 December 2010
AGP
Anc ???
- Example:
#ref qry ref_len qry_len ref_start ref_end qry_start qry_end ref_snp qry_snp merge_count qry_dir ref_intercept 1 7180002077591 200994015 85878 19836 20318 78868 79351 58 58 1 1 -0.05 1 7180002077591 200994015 85878 27827 83785 67617 1127 23332 34016 14 -1 0.09 1 7180002077394 200994015 6640 84737 93563 6628 30 4229 2614 5 -1 0.09
GFF
Posmap
- 0-bases
- Example:
#qry ref ref_start ref_end qry_dir 7180001689070 7180002030581 0 1756 f 7180002006045 7180002030582 0 1771 f 7180001780952 7180002030582 2324 3879 r
Delta
- Example:
#>ref qry ref_len qry_len #ref_start ref_end qry_start qry_end ref_snps qry_snps >Z 7180002076836 74602320 1640 71525049 71526705 1640 2 192 192 0 ...