Dpuiu snp: Difference between revisions
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(→Soap) |
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* Example: | * Example: | ||
2bwt-builder genome.fasta | 2bwt-builder genome.fasta | ||
soap2 –a frag_1.fastq -b frag_2.fastq -D genome.fasta.index -o frag.mated. | soap2 –a frag_1.fastq -b frag_2.fastq -D genome.fasta.index -o frag.mated.soap -2 frag.single.soap -m 120 -x 240 | ||
soapsnp -i frag.mated. | soapsnp -i frag.mated.soap.sorted -d genome.fasta -o genome.cns | ||