Dpuiu articles

My articles

2011

• Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis PLoS ONE July 2011
• Complete sequences of mitochondria genomes of Aedes aegypti and Culex quinquefasciatus and comparative analysis of mitochondrial DNA fragments inserted in the nuclear genomes Insect Biochemistry and Molecular Biology

2010

• Draft genome sequence of the oilseed species Ricinus communis Nat Biotechnol. 2010 September; 28(9): 951–956.
• Multi-Platform Next-Generation Sequencing of the Domestic Turkey: Genome Assembly and Analysis PLoS Biol 2010 8(9): e1000475.
• Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics Science 1 October 2010:Vol. 330 no. 6000 pp. 86-88
• Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire Genome Biology 2010, 11:R73
• New Assembly, Reannotation and Analysis of the Entamoeba histolytica Genome Reveal New Genomic Features and Protein Content Information PLoS Negl Trop Dis. 2010 June; 4(6): e716

2009

• A whole-genome assembly of the domestic cow, Bos taurus Genome Biology 2009, 10:R42
• Genome Sequence of the Wolbachia Endosymbiont of Culex quinquefasciatus JHB Journal of Bacteriology March 2009, p. 1725, Vol. 191, No. 5

2008

• Re-Assembly of the Genome of Francisella tularensis Subsp. holarctica OSU18 PLoS ONE 2008 3(10): e3427.
• Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads PLoS Comput Biol 2008 4(9): e1000186.
• Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99 BMC Genomics 2008, 9:204

2007

• Genome of the Opportunistic Pathogen Streptococcus sanguinis JBacteriology April 2007, p. 3166-3175, Vol. 189, No. 8

2004

• The genome of Cryptosporidium hominis Nature 431, 1107-1112 (28 October 2004)
• GeneX Va: VBC open source microarray database and analysis software. Biotechniques. 2004 Apr;36(4):634-8, 640, 642
• Partitioning of Rearranged Ig Genes by Mutation Analysis Demonstrates D-D Fusion and V Gene Replacement in the Expressed Human Repertoire The Journal of Immunology, 2004, 172: 340-348
• CryptoDB: the Cryptosporidium genome resource Nucl. Acids Res. (2004) 32 (suppl 1): D329-D331.
• SUPERCONTIGS: A Contig Scaffolding Tool CSB

2002

• Self-Adapting Backfilling Scheduling for Parallel Systems ICPP 2002

2001

• Intermediate Representation in Model Based Recognition Using Straight Line and Ellipsoidal Arc Primitives ICIAP 2001

File location:

/nfshomes/dpuiu/Archives/JCVI/Documents/Personal/Career/

To read

• Evidence for symmetric chromosomal inversions around the replication origin in bacteria GenomeBiology 2000
• A simple, fast, and accurate method of phylogenomic inference GenomeBiology 2008
• The quest for orthologs: finding the corresponding gene across genomes