Dpuiu articles

My articles

2011

• Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis PLoS ONE, July 2011
• Complete sequences of mitochondria genomes of Aedes aegypti and Culex quinquefasciatus and comparative analysis of mitochondrial DNA fragments inserted in the nuclear genomes Insect Biochemistry and Molecular Biology, May 2011

2010

• Draft genome sequence of the oilseed species Ricinus communis Nat Biotechnol. 2010 September; 28(9): 951–956.
• Multi-Platform Next-Generation Sequencing of the Domestic Turkey: Genome Assembly and Analysis PLoS Biol 2010 8(9): e1000475.
• Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics Science 1 October 2010:Vol. 330 no. 6000 pp. 86-88
• Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire Genome Biology 2010, 11:R73
• New Assembly, Reannotation and Analysis of the Entamoeba histolytica Genome Reveal New Genomic Features and Protein Content Information PLoS Negl Trop Dis. 2010 June; 4(6): e716

2009

• A whole-genome assembly of the domestic cow, Bos taurus Genome Biology 2009, 10:R42
• Genome Sequence of the Wolbachia Endosymbiont of Culex quinquefasciatus JHB Journal of Bacteriology March 2009, p. 1725, Vol. 191, No. 5

2008

• Re-Assembly of the Genome of Francisella tularensis Subsp. holarctica OSU18 PLoS ONE 2008 3(10): e3427.
• Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads PLoS Comput Biol 2008 4(9): e1000186.
• Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99 BMC Genomics 2008, 9:204

2007

• Genome of the Opportunistic Pathogen Streptococcus sanguinis JBacteriology April 2007, p. 3166-3175, Vol. 189, No. 8

2004

• The genome of Cryptosporidium hominis Nature 431, 1107-1112 (28 October 2004)
• GeneX Va: VBC open source microarray database and analysis software. Biotechniques. 2004 Apr;36(4):634-8, 640, 642
• Partitioning of Rearranged Ig Genes by Mutation Analysis Demonstrates D-D Fusion and V Gene Replacement in the Expressed Human Repertoire The Journal of Immunology, 2004, 172: 340-348
• CryptoDB: the Cryptosporidium genome resource Nucl. Acids Res. (2004) 32 (suppl 1): D329-D331.
• SUPERCONTIGS: A Contig Scaffolding Tool CSB

2002

• Self-Adapting Backfilling Scheduling for Parallel Systems ICPP 2002

2001

• Intermediate Representation in Model Based Recognition Using Straight Line and Ellipsoidal Arc Primitives ICIAP 2001

File location:

/nfshomes/dpuiu/Archives/JCVI/Documents/Personal/Career/

To read

• Evidence for symmetric chromosomal inversions around the replication origin in bacteria GenomeBiology 2000
• A simple, fast, and accurate method of phylogenomic inference GenomeBiology 2008
• The quest for orthologs: finding the corresponding gene across genomes