Xanthomonas campestris pv raphani: Difference between revisions

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''... we describe the complete genome sequences of X. campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect Arabidopsis thaliana and rice, respectively, by colonizing the mesophyll tissue.''
''... we describe the complete genome sequences of X. campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect Arabidopsis thaliana and rice, respectively, by colonizing the mesophyll tissue.''
* Authors:  
* Authors:  
   Adam Bogdanove
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS/XCR_1.0.authors
  Ralf Koebnik
 
  Hong Lu
* Journal of Bacteriology: JB05262-11: Manuscript Received
  Ayako Furutani
   http://jb.msubmit.net/cgi-bin/main.plex?el=A5GM6BAn3A6Lzm2F5A9ByOjwxKoNULvSLJArPSKrwZ
  Samuel Angiuoli
  Prabhu Patil
  Marie-Anne Van Sluys
   Robert Ryan
  Damien Meyer
  Sang-Wook Han
  Gudlur Aparna
  Misha Rajaram
  Arthur Delcher
  Adam Phillippy
  Daniela Puiu
  Michael Schatz
  Martin Shumway
  Daniel Sommer
  Cole Trapnell
  Faiza Benahmed
  George Dimitrov
  Ramana Madupu
  Diana Radune
  Steven Sullivan
  Gopaljee Jha
  Hiromichi Ishihara
  Sang-Won Lee
  Alok Pandey
  Vikas Sharma
  Malinee Sriariyanun
  Boris Szurek
  Casiana Vera-Cruz
  Karin Dorman
  Pamela Ronald
  Valerie Verdier
  Max Dow
  Ramesh Sonti
  Seiji Tsuge
  Volker Brendel
  Pablo Rabinowicz
  JAN LEACH
  White Frank
  Steven Salzberg
* Journal of Bacteriology.


= NCBI =
= NCBI =
== XCR ==
   locus tag prefix XCR
   locus tag prefix XCR
   GenBank accession CP002789
   GenBank accession CP002789
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   traces
   traces
   trace assembly
   trace assembly
== XOC ==
   locus tag prefix XOC
   locus tag prefix XOC
   GenBank accession AAQN01000001 http://www.ncbi.nlm.nih.gov/nuccore/AAQN01000001
   GenBank accession AAQN01000001 http://www.ncbi.nlm.nih.gov/nuccore/AAQN01000001
Line 68: Line 30:


= Locations =  
= Locations =  
== XCR ==
* Mike's final assembly
* Mike's final assembly
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.frg
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.frg
Line 75: Line 38:
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.bnk
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.bnk


* Genbank submission:
= NCBI submission =
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/
== XCR ==
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank
  /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank      #older
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank.redo  #latest
   /fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS
 
== XOC ==
  /fs/szasmg/Bacteria/Xanthomonas/Xoc/genbank

Latest revision as of 14:27, 29 July 2011

Article

  • Title: Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

... we describe the complete genome sequences of X. campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect Arabidopsis thaliana and rice, respectively, by colonizing the mesophyll tissue.

  • Authors:
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS/XCR_1.0.authors
  • Journal of Bacteriology: JB05262-11: Manuscript Received
 http://jb.msubmit.net/cgi-bin/main.plex?el=A5GM6BAn3A6Lzm2F5A9ByOjwxKoNULvSLJArPSKrwZ

NCBI

XCR

 locus tag prefix	XCR	
 GenBank accession	CP002789	
 NCBI taxonomy	Xanthomonas campestris pv. raphani strain 756C	
 NCBI tax id	990315	http://www.ncbi.nlm.nih.gov/bioproject/990315
 NCBI project id	63187	http://www.ncbi.nlm.nih.gov/bioproject/63187
 traces 		
 trace assembly

XOC

 locus tag prefix	XOC	
 GenBank accession	AAQN01000001	http://www.ncbi.nlm.nih.gov/nuccore/AAQN01000001
 NCBI taxonomy	Xanthomonas oryzae pv. oryzicola BLS256	http://www.ncbi.nlm.nih.gov/taxonomy/383407
 NCBI tax id	383407	http://www.ncbi.nlm.nih.gov/taxonomy/383407
 NCBI project id	16740	http://www.ncbi.nlm.nih.gov/bioproject/16740
 shotgun traces 	57645 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=ncbi_project_id=16740
 finishing traces 	919 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&s=search&m=obtain&retrieve=Search&val=SPECIES_CODE%3D%27XANTHOMONAS+ORYZAE+PV.+ORYZICOLA+BLS256%27
 total traces	58353 traces	http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&s=search&m=obtain&retrieve=Search&val=SPECIES_CODE%3D%27XANTHOMONAS+ORYZAE+PV.+ORYZICOLA%27
 trace assembly	1 contig	http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&ai=1290&m=main&s=browse

Locations

XCR

  • Mike's final assembly
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.frg
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.asm
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.scaffolds.fasta
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted//autoJoin/results/Xca-retrim.fasta
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.bnk

NCBI submission

XCR

 /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank       #older
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank.redo  #latest
 /fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS

XOC

 /fs/szasmg/Bacteria/Xanthomonas/Xoc/genbank
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