Xanthomonas campestris pv raphani: Difference between revisions
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''... we describe the complete genome sequences of X. campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect Arabidopsis thaliana and rice, respectively, by colonizing the mesophyll tissue.'' | ''... we describe the complete genome sequences of X. campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect Arabidopsis thaliana and rice, respectively, by colonizing the mesophyll tissue.'' | ||
* Authors: | * Authors: | ||
/fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS/XCR_1.0.authors | |||
* Journal of Bacteriology: JB05262-11: Manuscript Received | * Journal of Bacteriology: JB05262-11: Manuscript Received | ||
| Line 51: | Line 9: | ||
= NCBI = | = NCBI = | ||
== XCR == | |||
locus tag prefix XCR | locus tag prefix XCR | ||
GenBank accession CP002789 | GenBank accession CP002789 | ||
| Line 58: | Line 17: | ||
traces | traces | ||
trace assembly | trace assembly | ||
== XOC == | |||
locus tag prefix XOC | locus tag prefix XOC | ||
GenBank accession AAQN01000001 http://www.ncbi.nlm.nih.gov/nuccore/AAQN01000001 | GenBank accession AAQN01000001 http://www.ncbi.nlm.nih.gov/nuccore/AAQN01000001 | ||
| Line 70: | Line 30: | ||
= Locations = | = Locations = | ||
== XCR == | |||
* Mike's final assembly | * Mike's final assembly | ||
/fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.frg | /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.frg | ||
| Line 78: | Line 39: | ||
= NCBI submission = | = NCBI submission = | ||
/fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank | == XCR == | ||
/fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank #older | |||
/fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank.redo #latest | |||
/fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS | /fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS | ||
== XOC == | |||
/fs/szasmg/Bacteria/Xanthomonas/Xoc/genbank | |||
Latest revision as of 14:27, 29 July 2011
Article
- Title: Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.
... we describe the complete genome sequences of X. campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect Arabidopsis thaliana and rice, respectively, by colonizing the mesophyll tissue.
- Authors:
/fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS/XCR_1.0.authors
- Journal of Bacteriology: JB05262-11: Manuscript Received
http://jb.msubmit.net/cgi-bin/main.plex?el=A5GM6BAn3A6Lzm2F5A9ByOjwxKoNULvSLJArPSKrwZ
NCBI
XCR
locus tag prefix XCR GenBank accession CP002789 NCBI taxonomy Xanthomonas campestris pv. raphani strain 756C NCBI tax id 990315 http://www.ncbi.nlm.nih.gov/bioproject/990315 NCBI project id 63187 http://www.ncbi.nlm.nih.gov/bioproject/63187 traces trace assembly
XOC
locus tag prefix XOC GenBank accession AAQN01000001 http://www.ncbi.nlm.nih.gov/nuccore/AAQN01000001 NCBI taxonomy Xanthomonas oryzae pv. oryzicola BLS256 http://www.ncbi.nlm.nih.gov/taxonomy/383407 NCBI tax id 383407 http://www.ncbi.nlm.nih.gov/taxonomy/383407 NCBI project id 16740 http://www.ncbi.nlm.nih.gov/bioproject/16740 shotgun traces 57645 traces http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&val=ncbi_project_id=16740 finishing traces 919 traces http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&s=search&m=obtain&retrieve=Search&val=SPECIES_CODE%3D%27XANTHOMONAS+ORYZAE+PV.+ORYZICOLA+BLS256%27 total traces 58353 traces http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=retrieve&s=search&m=obtain&retrieve=Search&val=SPECIES_CODE%3D%27XANTHOMONAS+ORYZAE+PV.+ORYZICOLA%27 trace assembly 1 contig http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&ai=1290&m=main&s=browse
Locations
XCR
- Mike's final assembly
/fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.frg /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/Xca-retrim.asm /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.scaffolds.fasta /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted//autoJoin/results/Xca-retrim.fasta /fs/szasmg/Bacteria/Xanthomonas/Xcr/assembly/retrim/0002-100/blasted/autoJoin/results/Xca-retrim.bnk
NCBI submission
XCR
/fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank #older /fs/szasmg/Bacteria/Xanthomonas/Xcr/genbank.redo #latest /fs/szasmg/Bacteria/Xanthomonas/Xcr/dbGSS
XOC
/fs/szasmg/Bacteria/Xanthomonas/Xoc/genbank