Francisella tularensis holarctica OR960246: Difference between revisions
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Center: Baylor | |||
Status: Assembly (111 contigs; 1,761,162 bp; maxLen=87,287 bp; avgLen=15,866 bp) | Status: Assembly (111 contigs; 1,761,162 bp; maxLen=87,287 bp; avgLen=15,866 bp) | ||
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BCM 4WG_FTUL.OR OR960246 4WG_FTUL.OR_000pA 454 . . 220,381 SRA | BCM 4WG_FTUL.OR OR960246 4WG_FTUL.OR_000pA 454 . . 220,381 SRA | ||
Total 746,772 | Total 746,772 | ||
== Assembly == | |||
'''2007_0722_454''' | |||
4WG_FTUL.OR_000sA & 4WG_FTUL.OR_000pA libraries | |||
=> 13 scaff, 108 LargeContigs, 1,763,624 bp | |||
/* | |||
** Consensus results. | |||
*/ | |||
consensusResults | |||
{ | |||
readStatus | |||
{ | |||
numberAssembled = 372353; | |||
numberPartial = 8864; | |||
numberSingleton = 5966; | |||
numberRepeat = 12750; | |||
numberOutlier = 1367; | |||
} | |||
pairedReadStatus | |||
{ | |||
numberWithBothMapped = 158109; | |||
numberWithOneUnmapped = 9015; | |||
numberMultiplyMapped = 15608; | |||
numberWithBothUnmapped = 729; | |||
} | |||
scaffoldMetrics | |||
{ | |||
numberOfScaffolds = 13; | |||
numberOfBases = 1763624; | |||
avgScaffoldSize = 135663; | |||
N50ScaffoldSize = 199976; | |||
largestScaffoldSize = 787808; | |||
} | |||
largeContigMetrics | |||
{ | |||
numberOfContigs = 108; | |||
numberOfBases = 1754647; | |||
avgContigSize = 16246; | |||
N50ContigSize = 22541; | |||
largestContigSize = 75931; | |||
Q40PlusBases = 1753885, 99.96%; | |||
Q39MinusBases = 762, 0.04%; | |||
} | |||
allContigMetrics | |||
{ | |||
numberOfContigs = 224; | |||
numberOfBases = 1776919; | |||
} | |||
} | |||
'''2007_0907_AMOScmp-454-OSU18 -> best''' | |||
99 contigs, 1895863 bp |
Latest revision as of 15:40, 26 November 2007
Center: Baylor
Status: Assembly (111 contigs; 1,761,162 bp; maxLen=87,287 bp; avgLen=15,866 bp)
Data
Libraries:
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT LOCATION BCM 4WG_FTUL.OR B-SA 4WG_FTUL.OR_000sA 454 . . 401,300 SRA ? BCM 4WG_FTUL.OR OR960246 4WG_FTUL.OR_000pA 454 . . 220,381 SRA Total 746,772
Assembly
2007_0722_454
4WG_FTUL.OR_000sA & 4WG_FTUL.OR_000pA libraries => 13 scaff, 108 LargeContigs, 1,763,624 bp /* ** Consensus results. */ consensusResults { readStatus { numberAssembled = 372353; numberPartial = 8864; numberSingleton = 5966; numberRepeat = 12750; numberOutlier = 1367; } pairedReadStatus { numberWithBothMapped = 158109; numberWithOneUnmapped = 9015; numberMultiplyMapped = 15608; numberWithBothUnmapped = 729; } scaffoldMetrics { numberOfScaffolds = 13; numberOfBases = 1763624; avgScaffoldSize = 135663; N50ScaffoldSize = 199976; largestScaffoldSize = 787808; } largeContigMetrics { numberOfContigs = 108; numberOfBases = 1754647; avgContigSize = 16246; N50ContigSize = 22541; largestContigSize = 75931; Q40PlusBases = 1753885, 99.96%; Q39MinusBases = 762, 0.04%; } allContigMetrics { numberOfContigs = 224; numberOfBases = 1776919; } }
2007_0907_AMOScmp-454-OSU18 -> best
99 contigs, 1895863 bp