Francisella tularensis holarctica OR960246: Difference between revisions
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Center: Baylor | |||
Status: Assembly (111 contigs; 1,761,162 bp; maxLen=87,287 bp; avgLen=15,866 bp) | Status: Assembly (111 contigs; 1,761,162 bp; maxLen=87,287 bp; avgLen=15,866 bp) | ||
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'''2007_0907_AMOScmp-454-OSU18 -> best''' | |||
99 contigs, 1895863 bp | |||
Latest revision as of 15:40, 26 November 2007
Center: Baylor
Status: Assembly (111 contigs; 1,761,162 bp; maxLen=87,287 bp; avgLen=15,866 bp)
Data
Libraries:
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT LOCATION BCM 4WG_FTUL.OR B-SA 4WG_FTUL.OR_000sA 454 . . 401,300 SRA ? BCM 4WG_FTUL.OR OR960246 4WG_FTUL.OR_000pA 454 . . 220,381 SRA Total 746,772
Assembly
2007_0722_454
4WG_FTUL.OR_000sA & 4WG_FTUL.OR_000pA libraries
=> 13 scaff, 108 LargeContigs, 1,763,624 bp
/*
** Consensus results.
*/
consensusResults
{
readStatus
{
numberAssembled = 372353;
numberPartial = 8864;
numberSingleton = 5966;
numberRepeat = 12750;
numberOutlier = 1367;
}
pairedReadStatus
{
numberWithBothMapped = 158109;
numberWithOneUnmapped = 9015;
numberMultiplyMapped = 15608;
numberWithBothUnmapped = 729;
}
scaffoldMetrics
{
numberOfScaffolds = 13;
numberOfBases = 1763624;
avgScaffoldSize = 135663;
N50ScaffoldSize = 199976;
largestScaffoldSize = 787808;
}
largeContigMetrics
{
numberOfContigs = 108;
numberOfBases = 1754647;
avgContigSize = 16246;
N50ContigSize = 22541;
largestContigSize = 75931;
Q40PlusBases = 1753885, 99.96%;
Q39MinusBases = 762, 0.04%;
}
allContigMetrics
{
numberOfContigs = 224;
numberOfBases = 1776919;
}
}
2007_0907_AMOScmp-454-OSU18 -> best
99 contigs, 1895863 bp