Francisella tularensis holarctica FSC022: Difference between revisions
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Center: Broad | Center: Broad | ||
Status: Assembly (19 contigs) | Status: Assembly (19 contigs) | ||
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/fs/szasmg2/Bacteria/F_tularensis_holarctica_FSC022 | /fs/szasmg2/Bacteria/F_tularensis_holarctica_FSC022 | ||
'''2007_0822_AMOScmp-454''' | '''2007_0822_AMOScmp-454 -> best''' | ||
original WGS + 454 reads | |||
16 scaff, 71 contigs, 1,823,163 bp | 16 scaff, 71 contigs, 1,823,163 bp | ||
'''Next''' | |||
Could use Sanger reads for scaffolding | |||
Latest revision as of 15:34, 23 August 2007
Center: Broad Status: Assembly (19 contigs)
Data
Reference
Name Length %GC NZ_AAYD01000001.1 60967 31.35 NZ_AAYD01000002.1 114061 32.76 NZ_AAYD01000003.1 103471 32.58 NZ_AAYD01000004.1 4791 35.84 NZ_AAYD01000005.1 6131 34.11 NZ_AAYD01000006.1 3593 31.48 NZ_AAYD01000007.1 33629 33.59 NZ_AAYD01000008.1 1098 31.24 NZ_AAYD01000009.1 20139 31.78 NZ_AAYD01000010.1 293900 31.84 NZ_AAYD01000011.1 313 45.69 NZ_AAYD01000012.1 474 45.78 NZ_AAYD01000013.1 116549 33.13 NZ_AAYD01000014.1 72895 33.31 NZ_AAYD01000015.1 508365 31.28 NZ_AAYD01000016.1 1020 27.45 NZ_AAYD01000017.1 127235 31.69 NZ_AAYD01000018.1 330502 32.15 NZ_AAYD01000019.1 59394 34.01 Total 1858527
Libraries:
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT LOCATION WIBR G790 022 G790A5 WGS 4,500 450 768 TA WIBR G790 022 G790A6 WGS 4,500 450 768 TA WIBR G790 022 G790A7 WGS 4,500 450 768 TA WIBR G790 022 G790A8 WGS 4,500 450 768 TA WIBR G918 022 454-411 454 . . 553,908 TA Total 556,980
Assembly
Location
/fs/szasmg2/Bacteria/F_tularensis_holarctica_FSC022
2007_0822_AMOScmp-454 -> best
original WGS + 454 reads 16 scaff, 71 contigs, 1,823,163 bp
Next
Could use Sanger reads for scaffolding