Burkholderia mallei: Difference between revisions
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NCBI | == Data == | ||
=== NCBI === | |||
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=Burkholderia%20mallei Genome Projects] | [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj&cmd=search&term=Burkholderia%20mallei Genome Projects] | ||
11 Genome Projects, 10 TIGR, 1 JCVI | |||
4 complete, 6 draft | TIGR: 4 complete, 6 draft | ||
JCVI: 1 progress, no assembly available (Aug 19th 2008) | |||
Genome projects | |||
1 Burkholderia mallei 2002721280 [TIGR] | |||
2 Burkholderia mallei ATCC 10399 [TIGR] | |||
3 Burkholderia mallei ATCC 23344 [TIGR] | |||
4 Burkholderia mallei FMH [TIGR] | |||
5 Burkholderia mallei GB8 horse 4 [TIGR] | |||
6 Burkholderia mallei JHU [TIGR] | |||
7 Burkholderia mallei NCTC 10229 [TIGR] | |||
8 Burkholderia mallei NCTC 10247 [TIGR] | |||
9 Burkholderia mallei PRL-20 [TIGR] | |||
10 Burkholderia mallei SAVP1 [TIGR] | |||
AA: | AA: | ||
Assembly Name Submit. AssID TaxID TotalLength #Contigs #Traces Cov Comment | |||
Assembly Name Submit. AssID TaxID TotalLength #Contigs #Traces Cov | 1. Burkholderia mallei 10229 TIGR 852 320386 5,742,303 2 97,133 13.1X tarchive2amos: ERROR - gap placement outside of contig | ||
1. Burkholderia mallei 10229 TIGR 852 320386 5,742,303 2 97,133 13.1X | |||
2. Burkholderia mallei 10399 TIGR 625 320387 5,933,783 106 67,042 8.9X | 2. Burkholderia mallei 10399 TIGR 625 320387 5,933,783 106 67,042 8.9X | ||
3. Burkholderia mallei 2002721280 TIGR 971 370895 5,690,468 208 58,158 8.3X | 3. Burkholderia mallei 2002721280 TIGR 971 370895 5,690,468 208 58,158 8.3X | ||
4. Burkholderia mallei ATCC 23344 TIGR 20* 243160 5,835,527 2 82,118 8.2X | 4. Burkholderia mallei ATCC 23344 TIGR 20* 243160 5,835,527 2 82,118 8.2X assembly can be viewed online but not avail. for download | ||
5. Burkholderia mallei FMH TIGR 656 334802 5,814,647 205 66,302 8.5X | 5. Burkholderia mallei FMH TIGR 656 334802 5,814,647 205 66,302 8.5X tarchive2amos: ERROR - gap placement outside of contig | ||
6. Burkholderia mallei GB8 horse 4 TIGR 627 320390 5,804,858 181 57,633 7.5X | 6. Burkholderia mallei GB8 horse 4 TIGR 627 320390 5,804,858 181 57,633 7.5X | ||
7. Burkholderia mallei JHU TIGR 655 334803 5,713,799 184 67,018 8.5X | 7. Burkholderia mallei JHU TIGR 655 334803 5,713,799 184 67,018 8.5X | ||
8. Burkholderia mallei NCTC 10247 TIGR 2385 320389 5,848,380 2 56,079 7.6X | 8. Burkholderia mallei NCTC 10247 TIGR 2385 320389 5,848,380 2 56,079 7.6X some traces are missing from AA download but are present in TA_FTP | ||
9. Burkholderia mallei PRL-20 TIGR 2706 436115 5,669,492 272 60,248 7.9X | 9. Burkholderia mallei PRL-20 TIGR 2706 436115 5,669,492 272 60,248 7.9X | ||
10. Burkholderia mallei SAVP1 TIGR 2383 320388 5,232,401 2 57,382 8.3X | 10. Burkholderia mallei SAVP1 TIGR 2383 320388 5,232,401 2 57,382 8.3X | ||
File locations: | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/ | |||
== Insignia == | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2383.complete | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2385.complete.missing_traces.fixed | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2706 | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-625 | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-627 | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-655 | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-656.gap_err | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-852.complete.gap_err | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-971 | |||
/fs/szasmg2/Bacteria/Burkholderia_mallei/ATCC_23344/best/ : completed by TIGR (4 pieces by AMOSCmp) | |||
??? Was it used as reference to compute signitures? | |||
Latest revision as of 15:23, 19 August 2008
Data
NCBI
Genome Projects 11 Genome Projects, 10 TIGR, 1 JCVI TIGR: 4 complete, 6 draft JCVI: 1 progress, no assembly available (Aug 19th 2008)
Genome projects
1 Burkholderia mallei 2002721280 [TIGR]
2 Burkholderia mallei ATCC 10399 [TIGR]
3 Burkholderia mallei ATCC 23344 [TIGR]
4 Burkholderia mallei FMH [TIGR]
5 Burkholderia mallei GB8 horse 4 [TIGR]
6 Burkholderia mallei JHU [TIGR]
7 Burkholderia mallei NCTC 10229 [TIGR]
8 Burkholderia mallei NCTC 10247 [TIGR]
9 Burkholderia mallei PRL-20 [TIGR]
10 Burkholderia mallei SAVP1 [TIGR]
AA:
Assembly Name Submit. AssID TaxID TotalLength #Contigs #Traces Cov Comment 1. Burkholderia mallei 10229 TIGR 852 320386 5,742,303 2 97,133 13.1X tarchive2amos: ERROR - gap placement outside of contig 2. Burkholderia mallei 10399 TIGR 625 320387 5,933,783 106 67,042 8.9X 3. Burkholderia mallei 2002721280 TIGR 971 370895 5,690,468 208 58,158 8.3X 4. Burkholderia mallei ATCC 23344 TIGR 20* 243160 5,835,527 2 82,118 8.2X assembly can be viewed online but not avail. for download 5. Burkholderia mallei FMH TIGR 656 334802 5,814,647 205 66,302 8.5X tarchive2amos: ERROR - gap placement outside of contig 6. Burkholderia mallei GB8 horse 4 TIGR 627 320390 5,804,858 181 57,633 7.5X 7. Burkholderia mallei JHU TIGR 655 334803 5,713,799 184 67,018 8.5X 8. Burkholderia mallei NCTC 10247 TIGR 2385 320389 5,848,380 2 56,079 7.6X some traces are missing from AA download but are present in TA_FTP 9. Burkholderia mallei PRL-20 TIGR 2706 436115 5,669,492 272 60,248 7.9X 10. Burkholderia mallei SAVP1 TIGR 2383 320388 5,232,401 2 57,382 8.3X
File locations:
/fs/szasmg2/Bacteria/Burkholderia_mallei/
Insignia
/fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2383.complete /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2385.complete.missing_traces.fixed /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-2706 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-625 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-627 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-655 /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-656.gap_err /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-852.complete.gap_err /fs/szasmg2/Bacteria/Burkholderia_mallei/AA/CS--AI-971 /fs/szasmg2/Bacteria/Burkholderia_mallei/ATCC_23344/best/ : completed by TIGR (4 pieces by AMOSCmp) ??? Was it used as reference to compute signitures?