Francisella tularensis tularensis FSC033: Difference between revisions
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Broad | Center: Broad | ||
Assembly (15 contigs) | Status: Assembly (15 contigs) | ||
Assembly | == Data == | ||
Reference: | |||
NZ_AAYE00000000 | |||
Traces: from NCBI TA | |||
Libraries: | |||
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT Location | |||
WIBR G907 033 G907A1 WGS 4,500 450 768 TA | |||
WIBR G907 033 G907A2 WGS 4,500 450 768 TA | |||
WIBR G907 033 G907A3 WGS 4,500 450 20,736 TA | |||
WIBR G907 033 G907A4 WGS 4,500 450 768 TA | |||
WIBR G919 033 454-410 454 . . 278,235 TA | |||
StrainSubtotal 301,275 | |||
== Assembly == | |||
Locations: | |||
/fs/szasmg/Bacteria/F_tularensis_tularensis_FSC033/ | /fs/szasmg/Bacteria/F_tularensis_tularensis_FSC033/ | ||
2007_0807_AMOScmp | |||
Uses default trimming | |||
AMOScmp | |||
=> 13 scaff, 32 contigs | |||
2007_0807_WGA | |||
Only WGS reads | |||
runCA-OBT.pl => new read clr, new library insert estimates | |||
=> 12 scaff, 23 contigs | |||
2007_0807_AMOScmp-OBT | |||
use read clr, library insert estimates from 2007_0807_WGA | |||
=> 13 scaff, 23 contigs | |||
Revision as of 18:19, 9 August 2007
Center: Broad Status: Assembly (15 contigs)
Data
Reference:
NZ_AAYE00000000
Traces: from NCBI TA
Libraries:
CENTER PROJECT STRAIN LIB TYPE SIZE STDEV COUNT Location WIBR G907 033 G907A1 WGS 4,500 450 768 TA WIBR G907 033 G907A2 WGS 4,500 450 768 TA WIBR G907 033 G907A3 WGS 4,500 450 20,736 TA WIBR G907 033 G907A4 WGS 4,500 450 768 TA WIBR G919 033 454-410 454 . . 278,235 TA StrainSubtotal 301,275
Assembly
Locations:
/fs/szasmg/Bacteria/F_tularensis_tularensis_FSC033/
2007_0807_AMOScmp
Uses default trimming AMOScmp => 13 scaff, 32 contigs
2007_0807_WGA
Only WGS reads runCA-OBT.pl => new read clr, new library insert estimates => 12 scaff, 23 contigs
2007_0807_AMOScmp-OBT
use read clr, library insert estimates from 2007_0807_WGA => 13 scaff, 23 contigs