NCBI submission: Difference between revisions
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[http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=submit&m=doc&s=submit TA] | [http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=submit&m=doc&s=submit TA] | ||
== | == Procedure == | ||
Files: | |||
.contig, .seq, .qual, .seq_name2ti | |||
Steps: | |||
1. makeConinfo ASSEMBLY.coninfo | |||
2. buildAssemblyArchive ASSEMBLY.coninfo --prompt --subname umd-20070816-125223 | |||
3. validate: | |||
oXygen: software used by NCBI; license required | oXygen: software used by NCBI; license required | ||
xmllint: open source | xmllint: open source | ||
$ xmllint --schema ASSEMBLY.xsd ASSEMBLY.xml > /dev/null | |||
Revision as of 16:20, 17 August 2007
NCBI
seqin: standalone application
Compressed archive containing 2 files: ASSEMBLY.xml , MD5 Accepted only by uploading to NCBI FTP server. server: ftp-private.ncbi.nlm.nih.gov login: umd_trc passwd: center: UMD description: University of Maryland ASSEMBLY XML Schema png ASSEMBLY XML Schema xsd
Procedure
Files:
.contig, .seq, .qual, .seq_name2ti
Steps:
1. makeConinfo ASSEMBLY.coninfo 2. buildAssemblyArchive ASSEMBLY.coninfo --prompt --subname umd-20070816-125223 3. validate: oXygen: software used by NCBI; license required xmllint: open source $ xmllint --schema ASSEMBLY.xsd ASSEMBLY.xml > /dev/null