Francisella tularensis holarctica OR960246

Center: Baylor

 Status: Assembly (111 contigs; 1,761,162 bp; maxLen=87,287 bp; avgLen=15,866 bp)

Data

Libraries:

 CENTER  PROJECT     STRAIN   LIB               TYPE SIZE STDEV COUNT   LOCATION
 BCM     4WG_FTUL.OR B-SA     4WG_FTUL.OR_000sA 454  .   .      401,300 SRA ?
 BCM     4WG_FTUL.OR OR960246 4WG_FTUL.OR_000pA 454  .   .      220,381 SRA
 Total                                                          746,772

Assembly

2007_0722_454 -> best

 4WG_FTUL.OR_000sA & 4WG_FTUL.OR_000pA libraries
 => 13 scaff, 108 LargeContigs, 1,763,624 bp
 /*
 **  Consensus results.
 */
 consensusResults
 {
       readStatus
       {
               numberAssembled = 372353;
               numberPartial   = 8864;
               numberSingleton = 5966;
               numberRepeat    = 12750;
               numberOutlier   = 1367;
       }

       pairedReadStatus
       {
               numberWithBothMapped   = 158109;
               numberWithOneUnmapped  = 9015;
               numberMultiplyMapped   = 15608;
               numberWithBothUnmapped = 729;
       }

       scaffoldMetrics
       {
               numberOfScaffolds   = 13;
               numberOfBases       = 1763624;

               avgScaffoldSize     = 135663;
               N50ScaffoldSize     = 199976;
               largestScaffoldSize = 787808;
       }

       largeContigMetrics
       {
               numberOfContigs   = 108;
               numberOfBases     = 1754647;

               avgContigSize     = 16246;
               N50ContigSize     = 22541;
               largestContigSize = 75931;

               Q40PlusBases      = 1753885, 99.96%;
               Q39MinusBases     = 762, 0.04%;
       }

       allContigMetrics
       {
               numberOfContigs = 224;
               numberOfBases   = 1776919;
       }
 }