Pseudodomonas syringae: Difference between revisions
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New sequence: | New sequence: | ||
* Solexa 3 lanes; | |||
* 454 shotgun 1/4 Plate (250bp read); | |||
* 454 paired ends 1/4 Plate. | |||
http://biology622.dhcp.unc.edu/~labweb/DCData/ | Download: http://biology622.dhcp.unc.edu/~labweb/DCData/ | ||
* Theoretical minimum number of contigs we can obtain is 268 (our reads fail to cover 269 nucleotides). | * Theoretical minimum number of contigs we can obtain is 268 (our reads fail to cover 269 nucleotides). | ||
Revision as of 19:15, 9 October 2007
Pseudodomonas syringae strain DC 3000
Originally sequenced and finished at TIGR
UNC:
New sequence:
- Solexa 3 lanes;
- 454 shotgun 1/4 Plate (250bp read);
- 454 paired ends 1/4 Plate.
Download: http://biology622.dhcp.unc.edu/~labweb/DCData/
- Theoretical minimum number of contigs we can obtain is 268 (our reads fail to cover 269 nucleotides).
- Our de novo assembly spans the genome in 853 contigs totaling 6,313,026 bp.
- 98.7% of the genome is covered by a contig;
- 84% of the genome is covered by contigs 10,000 bp or greater.
- The average gap size between contigs is 98 bp;
- average contig size 7401 bp.
- The N50 = 37,444 bp.
- Our largest BAMBUS "scaffold" is 2,565,761 bp,