Clostridium perfringens: Difference between revisions
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| Line 24: | Line 24: | ||
File locations: | File locations: | ||
/fs/szasmg2/Bacteria/C_perfringens | /fs/szasmg2/Bacteria/C_perfringens | ||
CBCB assemblies: | |||
STRAIN ATCC_13124 B_str__ATCC_362 CPE_str__F4969 C_str__JGS1495 E_str__JGS1987 SM101 str__nctc8239 | |||
placed 37 64 60 53 78 20 48 | |||
degen. 69 65 4 39 15 120 2 | |||
total 106 129 64 92 83 140 50 | |||
Revision as of 16:25, 10 October 2007
Data sources
NCBI:
Strains:
Strains:
1. A: not sequenced
2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC
3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
4. C str. JGS1495: JCVI, 40K reads, 84 contigs
5. CPE str. F4969: JCVI, 37K reads, 74 contig
6. D: not sequenced
7. E str. JGS1987: JCVI, 38K reads, 101 contigs
8. NCTC 8239: JCVI, 38K reads, 55 contigs
9. SM101: JCVI+TIGR, 43K reads, 3 contigs (chromosome+2 plasmids) (finished)
10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished);
password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/
File locations:
/fs/szasmg2/Bacteria/C_perfringens
CBCB assemblies:
STRAIN ATCC_13124 B_str__ATCC_362 CPE_str__F4969 C_str__JGS1495 E_str__JGS1987 SM101 str__nctc8239 placed 37 64 60 53 78 20 48 degen. 69 65 4 39 15 120 2 total 106 129 64 92 83 140 50