Clostridium perfringens: Difference between revisions
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9. SM101 29 120 140 | 9. SM101 29 120 140 | ||
10. 13 | 10. 13 | ||
* [[Media:C_perfringens.2007_1005_WGA.qc.combine|qc stats]] | |||
== ATCC_13124 == | == ATCC_13124 == | ||
/fs/szasmg2/Bacteria/C_perfringens/ATCC_13124/AA/CS--AI-1565/Ps.png | /fs/szasmg2/Bacteria/C_perfringens/ATCC_13124/AA/CS--AI-1565/Ps.png | ||
Revision as of 17:21, 16 October 2007
Data sources
NCBI:
Strains:
Strains:
1. A: not sequenced
2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC ; ??? what about plasmids
3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
4. C str. JGS1495: JCVI, 40K reads, 84 contigs
5. CPE str. F4969: JCVI, 37K reads, 74 contig
6. D: not sequenced
7. E str. JGS1987: JCVI, 38K reads, 101 contigs
8. NCTC 8239: JCVI, 38K reads, 55 contigs
9. SM101: JCVI+TIGR, 43K reads, 3 contigs (chromosome+2 plasmids) (finished)
10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished);
password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/
File locations:
/fs/szasmg2/Bacteria/C_perfringens
CBCB CA3 assemblies:
Placed Deg Total 1. A 2. ATCC_13124 37 69 106 3. B_str__ATCC_362 64 65 129 4. C_str__JGS1495 53 39 92 5. CPE_str__F4969 60 4 64 better 6. D 7. E_str__JGS1987 78 15 83 better 8. str__nctc8239 48 2 50 better 9. SM101 29 120 140 10. 13
ATCC_13124
/fs/szasmg2/Bacteria/C_perfringens/ATCC_13124/AA/CS--AI-1565/Ps.png