Clostridium perfringens: Difference between revisions
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(→SM101) |
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| Line 47: | Line 47: | ||
Location: /fs/szasmg2/Bacteria/C_perfringens/ATCC_13124/ | Location: /fs/szasmg2/Bacteria/C_perfringens/ATCC_13124/ | ||
AA contigs: | |||
Name Length %GC | |||
1 3256683 28.38 | |||
Reads: | Reads: | ||
| Line 52: | Line 56: | ||
FINISHING 2521 | FINISHING 2521 | ||
Total 54143 | Total 54143 | ||
* No reads align to SM101 plasmids | |||
== SM101 == | == SM101 == | ||
Revision as of 19:21, 16 October 2007
Data sources
NCBI:
Strains:
Strains:
1. A: not sequenced
2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC ; ??? what about plasmids
3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
4. C str. JGS1495: JCVI, 40K reads, 84 contigs
5. CPE str. F4969: JCVI, 37K reads, 74 contig
6. D: not sequenced
7. E str. JGS1987: JCVI, 38K reads, 101 contigs
8. NCTC 8239: JCVI, 38K reads, 55 contigs
9. SM101: JCVI+TIGR, 43K reads, 3 contigs (chromosome+2 plasmids) (finished)
10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished);
password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/
File locations:
/fs/szasmg2/Bacteria/C_perfringens
NCBI AA assemblied:
CBCB CA3 assemblies:
Placed Deg Total 1. A 2. ATCC_13124 37 69 106 3. B_str__ATCC_362 64 65 129 4. C_str__JGS1495 53 39 92 5. CPE_str__F4969 60 4 64 better 6. D 7. E_str__JGS1987 78 15 83 better 8. str__nctc8239 48 2 50 better 9. SM101 29 120 140 10. 13
ATCC_13124
Location: /fs/szasmg2/Bacteria/C_perfringens/ATCC_13124/
AA contigs:
Name Length %GC 1 3256683 28.38
Reads:
WGA 51622 FINISHING 2521 Total 54143 * No reads align to SM101 plasmids
SM101
Location: /fs/szasmg2/Bacteria/C_perfringens/SM101
AA contigs:
Name Length %GC 1 12397 26.68 2 12206 25.82 3 2897393 28.25
Reads:
WGA 40816 FINISHING 2994 Total 543810