Assembly merge: Difference between revisions
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Cases | = Cases = | ||
= No reference assembly = | == No reference assembly == | ||
== One data set, multiple denovo assemblers == | === One data set, multiple denovo assemblers === | ||
Example: | Example: | ||
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* run minimus on them | * run minimus on them | ||
== Multipls data sets, one(multiple) denovo assemblers == | === Multipls data sets, one(multiple) denovo assemblers === | ||
Example: | Example: | ||
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velvet assemblers for each set | velvet assemblers for each set | ||
= One reference assembly = | == One reference assembly == | ||
= Multiple reference assemblies = | == Multiple reference assemblies == | ||
---- | |||
= Examples = | |||
== Pseudomonas_syringae == | |||
Revision as of 17:49, 27 March 2008
Cases
No reference assembly
One data set, multiple denovo assemblers
Example:
* Solexa data * edena & velvet assemblers
Solutions:
* merge 2 assembly sets * run minimus on them
Multipls data sets, one(multiple) denovo assemblers
Example:
Solexa & 454 data velvet assemblers for each set