Cbcb:Pop-Lab:Dan-Report: Difference between revisions
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The analysis followed the methods from the paper [http://aem.asm.org/cgi/content/abstract/AEM.02181-07v1 Metagenomics: Read length matters]. | The analysis followed the methods from the paper [http://aem.asm.org/cgi/content/abstract/AEM.02181-07v1 Metagenomics: Read length matters]. | ||
'''Short description of the method''' | |||
* Homology detection by blasting(blastx) EST reads against NR database | * Homology detection by blasting(blastx) EST reads against NR database | ||
* Use CDD Search to find conserved domains in detected proteins | * Use CDD Search to find conserved domains in detected proteins | ||
Revision as of 16:57, 23 February 2009
Feb 23, 2009
- EST Read Annotation of the Coral Reef
Did a read analysis on EST sequences from soft corals. The analysis followed the methods from the paper Metagenomics: Read length matters.
Short description of the method
- Homology detection by blasting(blastx) EST reads against NR database
- Use CDD Search to find conserved domains in detected proteins
- Blast proteins against COG database to map proteins to COGs and functional groups
- Diva: Comparative analysis tool
Finishing the development of Google Gears version of the viewer. Developed client side/javascript support of GFF relational database
- Grid Upgrade
Transitioned RunCmd software packaged to Condor version 7. Worked with IT to upgrade grid to latest Redhat 64-bit OS.