Partition: Difference between revisions
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*/fs/szasmg/metagenomics/Partition/Partition.py [latest stable] | */fs/szasmg/metagenomics/Partition/Partition.py [latest stable] | ||
*/fs/szasmg/metagenomics/Partition/MetaPart/src/Partition.py [latest but possibly unstable builds] | */fs/szasmg/metagenomics/Partition/MetaPart/src/Partition.py [latest but possibly unstable builds] | ||
== Options == | |||
-p Populate the given partition/XML. | |||
-b Given the input file, build a partition. | |||
-m Metadata file that will be used to populate the partitions. | |||
-h Header information for the metadata, if not present column information | |||
for metadata will be found in first line of the metadata. | |||
-f Input fasta file. | |||
-s Split the fasta file based on the partition information | |||
and output to the directory. | |||
-o Name of the output .part file. | |||
-c Convert an old partition format into the new xml format. | |||
Revision as of 14:03, 13 August 2009
Summary
Partition is a python script that takes an input of regular expressions and metadata to build an xml file of matching header information from a fasta-formatted file. Partition.py is located at:
- /fs/szasmg/metagenomics/Partition/Partition.py [latest stable]
- /fs/szasmg/metagenomics/Partition/MetaPart/src/Partition.py [latest but possibly unstable builds]
Options
-p Populate the given partition/XML. -b Given the input file, build a partition. -m Metadata file that will be used to populate the partitions. -h Header information for the metadata, if not present column information
for metadata will be found in first line of the metadata.
-f Input fasta file. -s Split the fasta file based on the partition information
and output to the directory.
-o Name of the output .part file. -c Convert an old partition format into the new xml format.