Revision as of 20:42, 15 December 2009

Data

1 complete + 2 draft assembly strains:

NC_009515.1
complete ; 1,853,160bp
Ref: /fs/szdata/ncbi/ftp.ncbi.nih.gov/genomes/Bacteria/Methanobrevibacter_smithii_ATCC_35061/*fna
Published: Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut PNAS
Assembled: Phrap and PCAP

22 strains
half-way through sequencing (should have all the data by early to mid-January)
right now (--Dpuiu 15:19, 15 December 2009 (EST)):
- 10 strains sequenced by GAII Illumina (36mers) with 3-8 million reads per strain (coverage is 50-150x),
- 12 strains sequenced by 454-Titanium sequencing, with 20,000 to 90,000 reads per strain (coverage is ~5-20x).

@@ Line 2: / Line 2: @@
 == NCBI ==
-complete strain: NC_009515.1 1,853,160bp
+complete + 2 draft assembly strains:
+== Methanobrevibacter smithii ATCC 35061 ==
+* NC_009515.1
+* complete ; 1,853,160bp
 * Ref:  /fs/szdata/ncbi/ftp.ncbi.nih.gov/genomes/Bacteria/Methanobrevibacter_smithii_ATCC_35061/*fna
 * Published: [http://www.pnas.org/content/104/25/10643.long Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut] PNAS
 * Assembled: Phrap and PCAP
+== Methanobrevibacter smithii DSM 2374 ===
+* project: NZ_ABYV02000000
+* 1,727,775 bp
+* 25 contigs: NZ_ABYV02000001 .. NZ_ABYV02000025
+== Methanobrevibacter smithii DSM 2375 ==
+* project: NZ_ABYW00000000
+* 1,704,865 bp
+* 24 contigs: NZ_ABYW01000001 .. NZ_ABYW01000024
 == WUSTL (Gordon Lab) ==
 * 22 strains