Megachile rotundata: Difference between revisions
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= Data = | = Data = | ||
== | == Traces == | ||
* 8 pairs of data files (paired ends) | |||
cat trace.count | grep _1_ | sed 's/_sequence.txt//' | perl -ane 'print " ",$F[1],"\t",$F[0]/4,"\t",$F[0]/2,"\n";' | cat trace.count | grep _1_ | sed 's/_sequence.txt//' | perl -ane 'print " ",$F[1],"\t",$F[0]/4,"\t",$F[0]/2,"\n";' | ||
lib insert mates reads readLen ~coverage(500M genome) | lib insert mates reads readLen ~coverage(500M genome) reverse adaptors | ||
s_2_1_3kbp 3000 21563283 43,126,566 124 11 | s_2_1_3kbp 3000 21563283 43,126,566 124 11 ? circularizarion | ||
s_2_1_5kbp 5000 36218589 72,437,178 35 5 | s_2_1_5kbp 5000 36218589 72,437,178 35 5 yes | ||
s_2_1_8kbp 8000 198377 396,754 35 0.02 | s_2_1_8kbp 8000 198377 396,754 35 0.02 | ||
s_3_1 475 35548153 71,096,306 124 18 | s_3_1 475 35548153 71,096,306 124 18 | ||
| Line 14: | Line 16: | ||
s_7_1 475 34893313 69,786,626 124 18 | s_7_1 475 34893313 69,786,626 124 18 | ||
== | == Adaptors == | ||
>circularizarion | |||
CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA | |||
>circularizarion.revcomp | |||
TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG | |||
== Location == | == Location == | ||
Revision as of 14:50, 1 September 2010
Data
Traces
- 8 pairs of data files (paired ends)
cat trace.count | grep _1_ | sed 's/_sequence.txt//' | perl -ane 'print " ",$F[1],"\t",$F[0]/4,"\t",$F[0]/2,"\n";'
lib insert mates reads readLen ~coverage(500M genome) reverse adaptors s_2_1_3kbp 3000 21563283 43,126,566 124 11 ? circularizarion s_2_1_5kbp 5000 36218589 72,437,178 35 5 yes s_2_1_8kbp 8000 198377 396,754 35 0.02 s_3_1 475 35548153 71,096,306 124 18 s_4_1 475 35471044 70,942,088 124 18 s_5_1 475 35616846 71,233,692 124 18 s_6_1 475 35303840 70,607,680 124 18 s_7_1 475 34893313 69,786,626 124 18
Adaptors
>circularizarion CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA >circularizarion.revcomp TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG
Location
/fs/szattic-asmg5/Bees/Megachile_rotundata/error_correction/large_libs/s_?_?_?kb.sequence.cor.all.txt ftp://ftp.cbcb.umd.edu/pub/data/assembly/Megachile_rotundata/reads/s_?_?_?kb.sequence.cor.all.txt.gz
Assemblies
CA
- Version: 6.1
/fs/szdevel/dpuiu/SourceForge/wgs-6.1/Linux-amd64/bin/runCA
Location
mulberry:/scratch2/dpuiu/Megachile_rotundata