Francisella tularensis holarctica FSC022

 Center: Broad 
 Status: Assembly (19 contigs)

Data

Reference

 Name              Length %GC
 NZ_AAYD01000001.1 60967  31.35
 NZ_AAYD01000002.1 114061 32.76
 NZ_AAYD01000003.1 103471 32.58
 NZ_AAYD01000004.1 4791   35.84
 NZ_AAYD01000005.1 6131   34.11
 NZ_AAYD01000006.1 3593   31.48
 NZ_AAYD01000007.1 33629  33.59
 NZ_AAYD01000008.1 1098   31.24
 NZ_AAYD01000009.1 20139  31.78
 NZ_AAYD01000010.1 293900 31.84
 NZ_AAYD01000011.1 313    45.69
 NZ_AAYD01000012.1 474    45.78
 NZ_AAYD01000013.1 116549 33.13
 NZ_AAYD01000014.1 72895  33.31
 NZ_AAYD01000015.1 508365 31.28
 NZ_AAYD01000016.1 1020   27.45
 NZ_AAYD01000017.1 127235 31.69
 NZ_AAYD01000018.1 330502 32.15
 NZ_AAYD01000019.1 59394  34.01
 Total             1858527

Libraries:

 CENTER  PROJECT     STRAIN   LIB     TYPE SIZE  STDEV  COUNT   LOCATION
 WIBR    G790        022      G790A5  WGS  4,500 450    768     TA
 WIBR    G790        022      G790A6  WGS  4,500 450    768     TA
 WIBR    G790        022      G790A7  WGS  4,500 450    768     TA
 WIBR    G790        022      G790A8  WGS  4,500 450    768     TA
 WIBR    G918        022      454-411 454  .     .      553,908 TA
 Total                                                  556,980

Assembly

Location

 /fs/szasmg2/Bacteria/F_tularensis_holarctica_FSC022

2007_0822_AMOScmp-454 -> best

 original WGS + 454 reads
 16 scaff, 71 contigs, 1,823,163 bp

Next

 Could use Sanger reads for scaffolding