Clostridium perfringens: Difference between revisions
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/fs/szasmg2/Bacteria/C_perfringens | /fs/szasmg2/Bacteria/C_perfringens | ||
CBCB assemblies: | CBCB CA3 assemblies: | ||
Placed Deg Total | |||
1. A | |||
2. ATCC_13124 37 69 106 | |||
3. B_str__ATCC_362 64 65 129 | |||
4. C_str__JGS1495 53 39 92 | |||
5. CPE_str__F4969 60 4 64 better | |||
6. D | |||
7. E_str__JGS1987 78 15 83 better | |||
8. str__nctc8239 48 2 50 better | |||
9. SM101 29 120 140 | |||
Revision as of 16:32, 10 October 2007
Data sources
NCBI:
Strains:
Strains:
1. A: not sequenced
2. ATCC 13124: JCVI; 54K reads, 1 contig ; finished; 3,256,683 bp ;28.38% GC
3. B str. ATCC 3626: JCVI, 38K reads, 98 contigs
4. C str. JGS1495: JCVI, 40K reads, 84 contigs
5. CPE str. F4969: JCVI, 37K reads, 74 contig
6. D: not sequenced
7. E str. JGS1987: JCVI, 38K reads, 101 contigs
8. NCTC 8239: JCVI, 38K reads, 55 contigs
9. SM101: JCVI+TIGR, 43K reads, 3 contigs (chromosome+2 plasmids) (finished)
10. 13: University of Tsukuba Japan, 52K reads (not available in NCBI TA), 2 contigs(chomosome+plasmid), phrap assembly (finished);
password protected web site : http://kantaro2.grt.kyushu-u.ac.jp/microb/welch/
File locations:
/fs/szasmg2/Bacteria/C_perfringens
CBCB CA3 assemblies:
Placed Deg Total 1. A 2. ATCC_13124 37 69 106 3. B_str__ATCC_362 64 65 129 4. C_str__JGS1495 53 39 92 5. CPE_str__F4969 60 4 64 better 6. D 7. E_str__JGS1987 78 15 83 better 8. str__nctc8239 48 2 50 better 9. SM101 29 120 140