Assembly merge: Difference between revisions
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== Pseudomonas_syringae == | == Pseudomonas_syringae == | ||
Assemblies | |||
assembler type #ctgs min max mean stdev sum | |||
AMOScmp comparative 187 20 577929 34863.06 91692.34 6519394 | |||
edena denovo 14084 100 5075 210.92 145.68 2970720 | |||
velvet denovo 25161 45 5057 241.83 212.61 6084887 | |||
edena-sim denovo 2068 100 47881 2994.03 4857.76 6191673 | |||
velvet-sim denovo 2207 45 56810 2820.91 5348.36 6225757 | |||
Revision as of 17:54, 27 March 2008
Cases
No reference assembly
One data set, multiple denovo assemblers
Example:
* Solexa data * edena & velvet assemblers
Solutions:
* merge 2 assembly sets * run minimus on them
Multipls data sets, one(multiple) denovo assemblers
Example:
Solexa & 454 data velvet assemblers for each set
One reference assembly
Multiple reference assemblies
Examples
Pseudomonas_syringae
Assemblies
assembler type #ctgs min max mean stdev sum AMOScmp comparative 187 20 577929 34863.06 91692.34 6519394
edena denovo 14084 100 5075 210.92 145.68 2970720 velvet denovo 25161 45 5057 241.83 212.61 6084887
edena-sim denovo 2068 100 47881 2994.03 4857.76 6191673 velvet-sim denovo 2207 45 56810 2820.91 5348.36 6225757