Brugia malayi: Difference between revisions
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= Genome = | = Genome = | ||
* 6 chromosomes: 1-5, XY | |||
* ~ 90M, 30% GC, 32% coding, 15% repeats | |||
= Genome Projects = | |||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10729 NCBI Genome project] | * [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10729 NCBI Genome project] | ||
* [http://www.tigr.org/tdb/e2k1/bma1/intro.shtml TIGR Genome project] (TRS strain) | * [http://www.tigr.org/tdb/e2k1/bma1/intro.shtml TIGR Genome project] (TRS strain) | ||
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* 8,000 BAC clones @Children's Hospital Oakland Research Institute. | * 8,000 BAC clones @Children's Hospital Oakland Research Institute. | ||
* 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K) | * 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K) | ||
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* Wolbachia endosymbiont strain wMel progress (TIGR) | * Wolbachia endosymbiont strain wMel progress (TIGR) | ||
* NCBI TA | * [ftp://ftp.ncbi.nih.gov/pub/TraceDB/brugia_malayi/ NCBI TA FTP] | ||
Summary: | |||
* all: 1,260,215 | * all: 1,260,215 | ||
* TRACE_TYPE_CODE | * TRACE_TYPE_CODE | ||
Revision as of 19:38, 18 August 2008
Articles
Genome
- 6 chromosomes: 1-5, XY
- ~ 90M, 30% GC, 32% coding, 15% repeats
Genome Projects
- NCBI Genome project
- TIGR Genome project (TRS strain)
Libraries: * 2K : bulk of the sequence @TIGR * 15-20 K @TIGR * 8,000 BAC clones @Children's Hospital Oakland Research Institute.
- 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K)
- mitochondrion finished: 13,657 bp; 24% GC
- Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel complete: 1,080,084 bp; 34%GC (New England Biolabs)
- Wolbachia endosymbiont strain wMel progress (TIGR)
Summary:
* all: 1,260,215
* TRACE_TYPE_CODE
* WGS: 1,258,277
* TRANSPOSON: 1,437
* PRIMER_WALK 501
* CENTER NAME
* TIGR: 856,624
* JCVI 403,591
* SEQ_LIB_ID: