Brugia malayi: Difference between revisions
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[http://www.sciencemag.org/cgi/content/full/317/5845/1756 Science 2007] | [http://www.sciencemag.org/cgi/content/full/317/5845/1756 Science 2007] | ||
= Genome = | = Genome Info = | ||
* 6 chromosomes: 1-5, XY | * 6 chromosomes: 1-5, XY | ||
* ~ 90M, 30% GC, 32% coding, 15% repeats | * ~ 90M, 30% GC, 32% coding, 15% repeats | ||
= Genome | = Genome Project = | ||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10729 NCBI Genome project] | * [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10729 NCBI Genome project] | ||
| Line 23: | Line 23: | ||
* [ftp://ftp.ncbi.nih.gov/pub/TraceDB/brugia_malayi/ NCBI TA FTP] | * [ftp://ftp.ncbi.nih.gov/pub/TraceDB/brugia_malayi/ NCBI TA FTP] | ||
Trace summary: | |||
* all: 1,260,215 | * all: 1,260,215 | ||
* TRACE_TYPE_CODE | * TRACE_TYPE_CODE | ||
| Line 35: | Line 35: | ||
= Other sequences = | = Other sequences = | ||
== Mitochondrion == | == Mitochondrion == | ||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=16713 mitochondrion] finished: 13,657 bp; 24% GC | * [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=16713 mitochondrion] finished: 13,657 bp; 24% GC | ||
== Symbiont == | == Symbiont == | ||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=630 Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel] complete: 1,080,084 bp; 34%GC (New England Biolabs) | * [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=630 Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel] complete: 1,080,084 bp; 34%GC (New England Biolabs) | ||
* Wolbachia endosymbiont strain wMel progress (TIGR) | * Wolbachia endosymbiont strain wMel progress (TIGR) | ||
Revision as of 19:40, 18 August 2008
Articles
Genome Info
- 6 chromosomes: 1-5, XY
- ~ 90M, 30% GC, 32% coding, 15% repeats
Genome Project
- NCBI Genome project
- TIGR Genome project (TRS strain)
Traces
Libraries: * 2K : bulk of the sequence @TIGR * 15-20 K @TIGR * 8,000 BAC clones @Children's Hospital Oakland Research Institute.
- 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K)
Trace summary:
* all: 1,260,215
* TRACE_TYPE_CODE
* WGS: 1,258,277
* TRANSPOSON: 1,437
* PRIMER_WALK 501
* CENTER NAME
* TIGR: 856,624
* JCVI 403,591
* SEQ_LIB_ID:
Other sequences
Mitochondrion
- mitochondrion finished: 13,657 bp; 24% GC
Symbiont
- Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel complete: 1,080,084 bp; 34%GC (New England Biolabs)
- Wolbachia endosymbiont strain wMel progress (TIGR)