Brugia malayi: Difference between revisions
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* 6 chromosomes: 1-5, XY | * 6 chromosomes: 1-5, XY | ||
* ~ 90M, 30% GC, 32% coding, 15% repeats | * ~ 90M, 30% GC, 32% coding, 15% repeats | ||
= Other sequences = | |||
== Mitochondrion == | |||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=16713 mitochondrion] finished: 13,657 bp; 24% GC | |||
== Symbiont == | |||
* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=genome&cmd=Retrieve&dopt=Overview&list_uids=630 Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel] complete: 1,080,084 bp; 34%GC (New England Biolabs) | |||
* Wolbachia endosymbiont strain wMel progress (TIGR) | |||
= Genome Project = | = Genome Project = | ||
| Line 19: | Line 30: | ||
* 15-20 K @TIGR | * 15-20 K @TIGR | ||
* 8,000 BAC clones @Children's Hospital Oakland Research Institute. | * 8,000 BAC clones @Children's Hospital Oakland Research Institute. | ||
* [ftp://ftp.ncbi.nih.gov/pub/TraceDB/brugia_malayi/ NCBI TA FTP] | * [ftp://ftp.ncbi.nih.gov/pub/TraceDB/brugia_malayi/ NCBI TA FTP] | ||
| Line 34: | Line 43: | ||
* SEQ_LIB_ID: | * SEQ_LIB_ID: | ||
= | == Assemblies == | ||
== | === TIGR === | ||
* | * 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K) | ||
== | === CBCB === | ||
Revision as of 19:42, 18 August 2008
Articles
Genome Info
- 6 chromosomes: 1-5, XY
- ~ 90M, 30% GC, 32% coding, 15% repeats
Other sequences
Mitochondrion
- mitochondrion finished: 13,657 bp; 24% GC
Symbiont
- Wolbachia endosymbiont strain TRS from Brugia malayi strain wMel complete: 1,080,084 bp; 34%GC (New England Biolabs)
- Wolbachia endosymbiont strain wMel progress (TIGR)
Genome Project
- NCBI Genome project
- TIGR Genome project (TRS strain)
Traces
Libraries: * 2K : bulk of the sequence @TIGR * 15-20 K @TIGR * 8,000 BAC clones @Children's Hospital Oakland Research Institute.
Trace summary:
* all: 1,260,215
* TRACE_TYPE_CODE
* WGS: 1,258,277
* TRANSPOSON: 1,437
* PRIMER_WALK 501
* CENTER NAME
* TIGR: 856,624
* JCVI 403,591
* SEQ_LIB_ID:
Assemblies
TIGR
- 9X coverage, 856K Sanger traces => 8,200 scaff & 29,808 ctg (avg. scaff=~10K & avg ctg=~3K)