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| Line 41: |
Line 41: |
| C Virus Nipah Viral encephalitis 0 | | C Virus Nipah Viral encephalitis 0 |
| ==================================================================================================================== | | ==================================================================================================================== |
|
| |
| Notes:
| |
| * Several new Clostridium botulinum strains ; E3 Alaska complete & not in Insignia
| |
|
| |
| * Francisella philomiragia subsp. philomiragia ATCC 25017 project at DOE Joint Genome Institute ; complete; in Insignia
| |
| * Francisella tularensis B-SA project at Baylor College of Medicine; progress
| |
|
| |
| * 2 Bacillus athracis strains in progress at BCM; data available only by request
| |
|
| |
|
| |
| Bacillus+anthracis
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Clostridium+botulinum
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Francisella+tularensis
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all][http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Variola+major
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Variola+major%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Variola+major%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Variola+major%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Yersinia+pestis
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Brucella
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Brucella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Brucella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Brucella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Burkholderia+mallei
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Burkholderia+mallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Burkholderia+mallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Burkholderia+mallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Burkholderia+pseudomallei
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Burkholderia+pseudomallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Burkholderia+pseudomallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Burkholderia+pseudomallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Chlamydia+psittaci
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Chlamydia+psittaci%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Chlamydia+psittaci%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Chlamydia+psittaci%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Clostridium+perfringens
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Clostridium+perfringens%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+perfringens%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+perfringens%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Coxiella+burnetii
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Coxiella+burnetii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Coxiella+burnetii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Coxiella+burnetii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Cryptosporidium+parvum
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Cryptosporidium+parvum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all][http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Cryptosporidium+parvum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Cryptosporidium+parvum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Escherichia+coli+O157:H7
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Escherichia+coli+O157:H7%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Escherichia+coli+O157:H7%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Escherichia+coli+O157:H7%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Rickettsia+prowazekii
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Rickettsia+prowazekii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Rickettsia+prowazekii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Rickettsia+prowazekii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Salmonella
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Salmonella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Salmonella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Salmonella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Shigella
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Shigella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Shigella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Shigella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Staphyloccocus+aureus
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Staphyloccocus+aureus%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Staphyloccocus+aureus%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Staphyloccocus+aureus%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Vibrio+cholerae
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Vibrio+cholerae%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Vibrio+cholerae%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Vibrio+cholerae%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
|
| |
| Ricinus+communis
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Ricinus+communis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Ricinus+communis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
| |
| [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Ricinus+communis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
| |
Category Type Organism Disease #NCBI Genome Projects assembly(complete)
====================================================================================================================
A Bacteria Bacillus anthracis Anthrax 11(3)
A Bacteria Clostridium botulinum Botulism 11(8)
A Bacteria Francisella tularensis Tularemia 11(7)
A Bacteria Yersinia pestis Plague 16(7)
A Virus Arenaviruses(Lassa,Machupo...) Viral hemoragic fever 0
A Virus Bunyaviruses Viral hemoragic fever 0
A Virus Flaviruses Viral hemoragic fever 0
A Virus Filoviruses(Ebola,Marburg...) Viral hemoragic fever 0
A Virus Variola major Smallpox 0
B Bacteria Brucella Brucellosis 8(8)
B Bacteria Burkholderia mallei Glanders 10(4)
B Bacteria Burkholderia pseudomallei Melioidosis 21(4)
B Bacteria Campylobacter jejuni ? 11(5) NIAID only
B Bacteria Chlamydia psittaci Psittacosis 1(0)
B Bacteria Clostridium perfringens Food poisoning(Epsilon toxin) 8(2)
B Bacteria Coxiella burnetii Q fever 7(3)
B Bacteria Escherichia coli O157:H7 Food poisoning 16(2)
B Bacteria Listeria monocytogenes ? 20(2) NIAID only
B Bacteria Rickettsia prowazekii Typhus fever 1(1)
B Bacteria Salmonella Salmonellosis,Typhoid fever 30(10)
B Bacteria Shigella Shigellosis,Dysenteria 10(7)
B Bacteria Staphylococcus aureus Food poisoning(Enterotoxin B) 17(14)
B Bacteria Vibrio cholerae Cholera 15(2)
B Bacteria Yersinia enterocolitica ? 1(1) NIAID only
B Plant Ricinus communis poisoning(Ricinus toxin) 1(0)
B Protozoa Cryptosporidium parvum Cryptosporidiosis 1(1)
B Virus Alphaviruses Viral encephalitis 0
C Virus Hantavirus Hemorrhagic fever 0
C Virus Nipah Viral encephalitis 0
====================================================================================================================