Bioterrorism: Difference between revisions

Revision as of 16:39, 8 December 2008

 Category        Type            Organism                        Disease                        #NCBI Genome Projects assembly(complete)          
 ====================================================================================================================

 A               Bacteria        Bacillus anthracis              Anthrax                        11(3)
 A               Bacteria        Clostridium botulinum           Botulism                       11(8)
 A               Bacteria        Francisella tularensis          Tularemia                      11(7)
 A               Bacteria        Yersinia pestis                 Plague                         16(7)
 A               Virus           Arenaviruses(Lassa,Machupo...)  Viral hemoragic fever          0
 A               Virus           Bunyaviruses                    Viral hemoragic fever          0
 A               Virus           Flaviruses                      Viral hemoragic fever          0
 A               Virus           Filoviruses(Ebola,Marburg...)   Viral hemoragic fever          0
 A               Virus           Variola major                   Smallpox                       0
 
 B               Bacteria        Brucella                        Brucellosis                    8(8)
 B               Bacteria        Burkholderia mallei             Glanders                       10(4)
 B               Bacteria        Burkholderia pseudomallei       Melioidosis                    21(4)
 B               Bacteria        Campylobacter jejuni            ?                              11(5) NIAID only
 B               Bacteria        Chlamydia psittaci              Psittacosis                    1(0)
 B               Bacteria        Clostridium perfringens         Food poisoning(Epsilon toxin)  8(2)
 B               Bacteria        Coxiella burnetii               Q fever                        7(3)
 B               Bacteria        Escherichia coli O157:H7        Food poisoning                 16(2)
 B               Bacteria        Listeria monocytogenes          ?                              20(2) NIAID only
 B               Bacteria        Rickettsia prowazekii           Typhus fever                   1(1)
 B               Bacteria        Salmonella                      Salmonellosis,Typhoid fever    30(10)
 B               Bacteria        Shigella                        Shigellosis,Dysenteria         10(7) 
 B               Bacteria        Staphylococcus aureus           Food poisoning(Enterotoxin B)  17(14)
 B               Bacteria        Vibrio cholerae                 Cholera                        15(2)  
 B               Bacteria        Yersinia enterocolitica         ?                              1(1) NIAID only
 B               Plant           Ricinus communis                poisoning(Ricinus toxin)       1(0)
 B               Protozoa        Cryptosporidium parvum          Cryptosporidiosis              1(1)
 B               Virus           Alphaviruses                    Viral encephalitis             0
 
 C               Virus           Hantavirus                      Hemorrhagic fever              0   
 C               Virus           Nipah                           Viral encephalitis             0
 ====================================================================================================================

Notes:

Several new Clostridium botulinum strains ; E3 Alaska complete & not in Insignia
Francisella philomiragia subsp. philomiragia ATCC 25017 project at DOE Joint Genome Institute ; complete; in Insignia
Francisella tularensis B-SA project at Baylor College of Medicine; progress
2 Bacillus athracis strains in progress at BCM; data available only by request

Bacillus anthracis all 21 complete 3 assembly 14 inprogress 4

Clostridium botulinum all 16 complete 8 assembly 3 inprogress 5

@@ Line 50: / Line 50: @@
-Bacillus+anthracis
+Bacillus anthracis
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
+[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all] 21
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
+[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
+[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
+[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Bacillus+anthracis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Finprogress%5BPROP%5D%29 inprogress]
-Clostridium+botulinum
+Clostridium botulinum
 [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
+[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-Francisella+tularensis
+[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all][http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Francisella+tularensis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
+[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Clostridium+botulinum%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Finprogress%5BPROP%5D%29 inprogress]
-Variola+major
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Variola+major%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Variola+major%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Variola+major%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Yersinia+pestis
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Yersinia+pestis%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Brucella
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Brucella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Brucella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Brucella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Burkholderia+mallei
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Burkholderia+mallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Burkholderia+mallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Burkholderia+mallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Burkholderia+pseudomallei
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Burkholderia+pseudomallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Burkholderia+pseudomallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Burkholderia+pseudomallei%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Campylobacter+jejuni
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Campylobacter+jejuni%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Campylobacter+jejuni%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Campylobacter+jejuni%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Chlamydia+psittaci
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Chlamydia+psittaci%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Chlamydia+psittaci%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Chlamydia+psittaci%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Clostridium+perfringens
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Clostridium+perfringens%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+perfringens%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Clostridium+perfringens%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Coxiella+burnetii
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Coxiella+burnetii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Coxiella+burnetii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Coxiella+burnetii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Escherichia+coli+O157:H7
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Escherichia+coli+O157:H7%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Escherichia+coli+O157:H7%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Escherichia+coli+O157:H7%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Listeria+monocytogenes
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Listeria+monocytogenes%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all][http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Listeria+monocytogenes%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Listeria+monocytogenes%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Rickettsia+prowazekii
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Rickettsia+prowazekii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Rickettsia+prowazekii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Rickettsia+prowazekii%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Salmonella
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Salmonella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Salmonella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Salmonella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Shigella
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Shigella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Shigella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Shigella%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Staphyloccocus+aureus
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Staphyloccocus+aureus%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Staphyloccocus+aureus%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Staphyloccocus+aureus%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Vibrio+cholerae
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Vibrio+cholerae%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Vibrio+cholerae%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Vibrio+cholerae%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]
-Yersinia+enterocolitica
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%22Yersinia+enterocolitica%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29 all]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Yersinia+enterocolitica%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fcomplete%5BPROP%5D%29 complete]
-[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=%28%28%22Yersinia+enterocolitica%22%5BOrganism%5D+AND+pt%5Fdefault%5Bprop%5D%29+AND+seqstat%5Fassembly%5BPROP%5D%29 assembly]

Bioterrorism: Difference between revisions

Revision as of 16:39, 8 December 2008

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